RNA id: XM_021557022.2


Basic Information

Item Value
RNA id XM_021557022.2
length 1474
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110485648
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14162385 ~ 14171600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGTTTCCTTACGTCATGTCATTTATGTGCGACGACAGCGAAGGGGGAAAGATGGCGGCCGCCATGGTGCAAATGTCTTGTTTGTACCGTGGGATGCTAGCGGTCAGGGCAACTGGAATCCGACCGCTCATCCCTGGCCTGGTGCCGTCGCAGTTTAGAGCATTTTCTGTGAAGAAGGAGAAAGAGCCGGAACTGGAGGACAATCcatattataataaatatcaggaAAAGATCAGAAAGCTAAGGAGtgCCAAACCGCAGGAGTTCAATGCTCGGCTCGAGAAGCGAAATGAAATTAAACGGGAGCCACTCGGACACTCTAAACAATCAGAGTTCGTCAACCTCATGGAGCAGGAGTTAGAGAAGCGTGACAACCAGGCTGATGGTTCAGGCAGATTCACCAAAGACAAGACCCTAGGATCTATCCTGAACTTGGACTTGATCCAGGATAAGTCAGGAGAAGAAATTGCAGAGCTTTGGAGGCAGTATTATGCCACAAAAGACACCATAAGCGCCATCATACCATTCCTGTATGCGTTACCCCAAAAGGAGGGCTATGAATTTTTCCTGGGGCAGTGGTCGGACCACGAACTGCATTTCACGTCCCTGATCAATGTCCAGACCATGGGAGAGCACGCCCCCAGTCAGTTGATCCTCTACCACTATTCTGACCTGCAGAAAGACAAGGGTGTAGTGCTCATGACTGCCGAGATGGACCCTAAGTTCATGACAGTACATCTGGCTCAGTGCTTGGCCAATCAGGTGCAGCTGTTCTACGGAACCCAGCGGCAGGAGATTTTTAGATTGGTGGAGACCTTCAACCACAAACCAGCTGACTTTAAACACATGGCAGTGATTGCTGAGTTGGAACAGAGTGGCGTCAATCCTGCTCTCACCTCTGGAAACTAGATCAAGAGTTGTCAGACGGTGAAATTTTGCTCCAATTTACCAAGGGATTGGCACATGGTCATTCATTTGGCGCCAATCTTGCGTTTGCGAGAATGACGTCTTTTGCTTGGCACTAATCACCTGGTTGACCAGATGCATCAGTCAAAATGTATGCTAAATTCCCGGGCATAGACGATGTAATGAATCAATGTTATTTAATCTTATCAAAGCCTTAAATGTTATTTTTCACCTCTCCCCTGTCCATCTTACTGTTGTACTTGACAGTAGTCTCGTATTCCTGTCAGAACCCAGCCTACAACCCATAAGGCACTCTATACTGTACATAGGCCTCTGGCCAAATGTAATGCACTATGACCCCTTGTGGAAGGTAGTGCTCTATACacagaatagagtgccatttcatGTATGGTGTTCCCCTTCCAAATATTCTTGTTATTTTTAGATAGGATAACTGCAGGAATTTGGTTTTCAAAACAATGGAGTGTACAATGAGGTTTCGTACATAAGTATATTTGTACATataagtaaactcagcaaaaaaataaacgtcctctcactgtcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15054 lncRNA upstream 63094 14099008 ~ 14099291 (+) True G12680
TU15049 lncRNA upstream 71034 14090734 ~ 14091351 (+) False G12675
TU15044 lncRNA upstream 71089 14090734 ~ 14091296 (+) False G12675
TU15047 lncRNA upstream 71089 14090864 ~ 14091296 (+) True G12675
TU15029 lncRNA upstream 78409 14083471 ~ 14083976 (+) True G12670
TU15544 lncRNA downstream 249805 14421405 ~ 14421630 (+) True G13121
TU15787 lncRNA downstream 397499 14569099 ~ 14571242 (+) True G13334
TU15813 lncRNA downstream 462363 14633963 ~ 14635553 (+) False G13359
TU15814 lncRNA downstream 462363 14633963 ~ 14635553 (+) True G13359
TU15819 lncRNA downstream 470763 14642363 ~ 14642610 (+) True G13363
XM_021589094.2 mRNA upstream 17439 14140496 ~ 14144946 (+) True LOC110508285
XM_036946379.1 mRNA upstream 408710 13734763 ~ 13753675 (+) True tm2d1
XM_036946195.1 mRNA upstream 720857 13436016 ~ 13441528 (+) True pdzk1ip1
XM_021556420.2 mRNA upstream 731268 13425566 ~ 13431117 (+) True LOC110485322
XM_021556316.2 mRNA upstream 751095 13409282 ~ 13411290 (+) True LOC110485223
XM_021557288.2 mRNA downstream 919 14172519 ~ 14185257 (+) True LOC110485979
XM_036947133.1 mRNA downstream 20867 14192467 ~ 14214939 (+) False LOC110486057
XM_021557652.2 mRNA downstream 48567 14220167 ~ 14244412 (+) True axdnd1
XM_036947346.1 mRNA downstream 79789 14251389 ~ 14304106 (+) False tdrd5
XM_036947319.1 mRNA downstream 79790 14251390 ~ 14304106 (+) True tdrd5
TU14688 other upstream 530495 13630036 ~ 13631890 (+) False G12410
TU14679 other upstream 531097 13628863 ~ 13631288 (+) False G12410
TU14216 other upstream 902389 13238613 ~ 13259996 (+) True LOC110538561
TU11995 other upstream 2648003 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 4001099 10141244 ~ 10161286 (+) True gipc3
TU15077 other downstream 20856 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 507750 14679350 ~ 14679578 (+) True G13380
TU15839 other downstream 508098 14679698 ~ 14680027 (+) True G13381
TU15850 other downstream 528576 14700176 ~ 14700730 (+) True G13391
TU15897 other downstream 640171 14811771 ~ 14812624 (+) True G13434

Expression Profile