RNA id: TU15819


Basic Information

Item Value
RNA id TU15819
length 248
lncRNA type intronic
GC content 0.43
exon number 1
gene id G13363
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14642363 ~ 14642610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGGACAATACCAGGATCacaatattttttccatggcaaaaatgaaaacacgaagcagatctaactctttggtcctttaaaaacttGCAGTATGTAAagtattgtgttctatagcttggaaaataaatacgtGACTGGATGACagcataatgatgtttgtttccaacattaggactGTTTTCCTAAATAAGTTAAATTTGCTTCGTGTTTTGTTTGCTTGCCACAATACTAAGGAGTATCatgatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15813 lncRNA upstream 6810 14633963 ~ 14635553 (+) False G13359
TU15814 lncRNA upstream 6810 14633963 ~ 14635553 (+) True G13359
TU15787 lncRNA upstream 71121 14569099 ~ 14571242 (+) True G13334
TU15544 lncRNA upstream 220733 14421405 ~ 14421630 (+) True G13121
TU15066 lncRNA upstream 451548 14126330 ~ 14190815 (+) True G12692
TU15820 lncRNA downstream 120 14642730 ~ 14642996 (+) True G13364
TU15821 lncRNA downstream 995 14643605 ~ 14643821 (+) True G13365
TU15822 lncRNA downstream 1981 14644591 ~ 14644841 (+) True G13366
TU15827 lncRNA downstream 11743 14654353 ~ 14654620 (+) True G13370
TU15828 lncRNA downstream 13165 14655775 ~ 14656365 (+) True G13371
XM_036947567.1 mRNA upstream 146515 14350545 ~ 14495848 (+) False LOC110486505
XM_036948336.1 mRNA downstream 351327 14993937 ~ 15003427 (+) True LOC110487584
XM_021559606.2 mRNA downstream 373528 15016138 ~ 15019092 (+) False LOC110487655
XM_036948429.1 mRNA downstream 373815 15016425 ~ 15019092 (+) True LOC110487655
NM_001160664.2 mRNA downstream 381809 15024419 ~ 15026535 (+) True elav1
XM_036948626.1 mRNA downstream 432574 15075184 ~ 15080304 (+) False LOC110487930
TU15077 other upstream 434349 14192456 ~ 14208014 (+) True LOC110486057
TU14688 other upstream 1010473 13630036 ~ 13631890 (+) False G12410
TU14679 other upstream 1011075 13628863 ~ 13631288 (+) False G12410
TU14216 other upstream 1382367 13238613 ~ 13259996 (+) True LOC110538561
TU11995 other upstream 3127981 11476664 ~ 11514382 (+) True LOC110523899
TU15838 other downstream 36740 14679350 ~ 14679578 (+) True G13380
TU15839 other downstream 37088 14679698 ~ 14680027 (+) True G13381
TU15850 other downstream 57566 14700176 ~ 14700730 (+) True G13391
TU15897 other downstream 169161 14811771 ~ 14812624 (+) True G13434
TU16116 other downstream 318944 14961554 ~ 14962003 (+) True G13639

Expression Profile