RNA id: TU15820


Basic Information

Item Value
RNA id TU15820
length 213
lncRNA type intronic
GC content 0.46
exon number 2
gene id G13364
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14642730 ~ 14642996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGGGAGCATCGGGCTTTGGTGAACGATGACTAGTTGGAGGACAACAGATCTCTGTGGGAGCATCGGGCTTTGGTGAACGATGACTAGTTGGAGGTCAACAGATCTCTGTGGGAGCATCGGGCTTTGGTGAACGATGACTAGTTGGAGGTCAACAGATCTCTGTGGGAGCATCGGGCTTTGGTGAACGATGACTAGTTGGAGGTCAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15819 lncRNA upstream 120 14642363 ~ 14642610 (+) True G13363
TU15813 lncRNA upstream 7177 14633963 ~ 14635553 (+) False G13359
TU15814 lncRNA upstream 7177 14633963 ~ 14635553 (+) True G13359
TU15787 lncRNA upstream 71488 14569099 ~ 14571242 (+) True G13334
TU15544 lncRNA upstream 221100 14421405 ~ 14421630 (+) True G13121
TU15821 lncRNA downstream 609 14643605 ~ 14643821 (+) True G13365
TU15822 lncRNA downstream 1595 14644591 ~ 14644841 (+) True G13366
TU15827 lncRNA downstream 11357 14654353 ~ 14654620 (+) True G13370
TU15828 lncRNA downstream 12779 14655775 ~ 14656365 (+) True G13371
TU15833 lncRNA downstream 23659 14666655 ~ 14666903 (+) True G13375
XM_036947567.1 mRNA upstream 146882 14350545 ~ 14495848 (+) False LOC110486505
XM_036948336.1 mRNA downstream 350941 14993937 ~ 15003427 (+) True LOC110487584
XM_021559606.2 mRNA downstream 373142 15016138 ~ 15019092 (+) False LOC110487655
XM_036948429.1 mRNA downstream 373429 15016425 ~ 15019092 (+) True LOC110487655
NM_001160664.2 mRNA downstream 381423 15024419 ~ 15026535 (+) True elav1
XM_036948626.1 mRNA downstream 432188 15075184 ~ 15080304 (+) False LOC110487930
TU15077 other upstream 434716 14192456 ~ 14208014 (+) True LOC110486057
TU14688 other upstream 1010840 13630036 ~ 13631890 (+) False G12410
TU14679 other upstream 1011442 13628863 ~ 13631288 (+) False G12410
TU14216 other upstream 1382734 13238613 ~ 13259996 (+) True LOC110538561
TU11995 other upstream 3128348 11476664 ~ 11514382 (+) True LOC110523899
TU15838 other downstream 36354 14679350 ~ 14679578 (+) True G13380
TU15839 other downstream 36702 14679698 ~ 14680027 (+) True G13381
TU15850 other downstream 57180 14700176 ~ 14700730 (+) True G13391
TU15897 other downstream 168775 14811771 ~ 14812624 (+) True G13434
TU16116 other downstream 318558 14961554 ~ 14962003 (+) True G13639

Expression Profile