RNA id: XM_036948336.1


Basic Information

Item Value
RNA id XM_036948336.1
length 3284
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110487584
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14993937 ~ 15003427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACACTAGTTCATCTTGAATAATGTTTTTACATGAACAATTAAAAAAAGTTTAAACACTTCAATTAATCAACATTGAATGAATCAACATATCATTTCAAAATGTACAAATGATCTAACTTGTTTGTAAATGTTAGACATCTTAGTATGTAGGCTATTGTTACTAAAGCAGAATTTTGGACAAAAAAGATCATACCAAAGGTATGCTCCACTCCCTGATCTAAAGGGTgagcagacttctattccagcccagcaaTAATACACGTTATTATCAACTCATTAGGTTTGATACATTGAATTCTCCCAGCATACCTCCGGGAGAAGGATTGGCCTGTTACAGTTGTAATAAGTTTGTAGCCTACATTGTGTGTGACTTTTAACTGTATTTTAACCAGCAGTCTCTTGGGACATTCACTGGGACctcttcatctgcagacaggCTTTCGCAGCTCTCCATGTCTCAGGAAAGACAACATCACAAAGCAACAGGTTTAATTTTATTTCAATTACACAGCCCTGATTATTATCTGCCCGTCTTCATAGTTCTCATCTCTAAGGACTAGAACTGGATACTCTTTTCATGATGTCATCCCACAACCCGCCCTATTTAACTATGACAGCTGGAGCAGAAAATTATTTCACCCTCTTCCATTGCTGATATCTACAAATGTATTTAGAGCCTGAGTTAATTTAAAATTATAAATATGCCTAAATCAAGATACCATGTTAATATGAAGAAAGCTAACTGATGATATTTCACATAGCCAAGTAtgtaaagttggctagctagctatttagctAGCAGCTCACTAGCCTGCACACTAATTAGCCTacatagctagctggctaataatACATCGTTTAACATTTTCGAAAATGTACCGActtacttacttgaataggttcaTGCCCACGCCAACGAAGCTGCCAATCTTTTGTAGCGAAGCGTTGTCGAGCGGAGCCACCTCTTCTGGTTGAGAAGTTTCACACGCTTTGAAAACATGCCATACTTTTCGCGGTGAATTTGAACGTTCTAAAATTCCAATGACATTCAAAATACTGTTGTCACAACATTAGATAATTGCTTGTTGATGTTTCAAAGCAAATGCACAAACTTAGTGTCGCAGAGCATATAAAAAATAGGTAATAAGATATTTGACAATAATCGACGTTATTGATTTTGCACTCTACAGCAAAGGCATAGGAGCAATGGAAGAGCCCACCTGCCATGTCCAAGCAGGTGTTATGCTGGAGGATCTTAGGAAATTAGTCACTTGGGCTCACTCTCATGGCTCCCACTGTCCCCACAAGCTTTGGCACAAGGGAAAACTTAACCCAGGGGTTGGGCATCAGTGCAAAGTTAATTGGAGATGTGAGGTTGGACATGCCTTCGACTGGGCCTTGACACTTGCCACAGAGGTGAAAGTTGAGGAGGAaaagacagaggaggaggtggatgTAGGTCATAGGAGCAAGAGGAGGAGAATACAATGCCTGTCCTCggaagaggaaggggagatgGTATATACCCCATTCATTGGGAATATTACTGATGAAAATGGGGTTGAATCTGATATGAGCCTCTGTAGCCTTGTGACCCATGTGtcaagagagggaggagatgcccCAGTGAGAATGCTGGAAGAGGCCTTGACTTTAAAGTCcaagcagcagagaactgtgAAACAACCATTCTTTCCTAGGATGATTGTTAAGGAGCAACCCAAAGGAAATATCAACATGGAAGTTAGGTTGGAGCTAGAGCAAAATAACAATGAGACAAACCAAGAGGGAAGGGGCATTGAGAAGAGGACAGTTCTAAAGGAGGAAAGCCCAGGCCCAAATGAAAACCTCATTACAGCTCTTGACATCACCCCTCTCCAAAGCTGCCTTTCAGACATTGAGCGGGCCCCAGAAGATGAGGTGTGGGCGACTCCTAAGGGTGGACAgtgttccctctcccctcctaaaCCTAAGCCCCTATTCCAGGGCCAGGGTGAAACCCACAGGCAGGGCTCCTGTTGTGCTGCCGTCTTCCCACCTACACCTGAGAGATCAGGTGCGGCCTCAGGGCACTGTCCCCCTAATAAAGGCAAGGTGAAGGCAGCACCCAAGAAACCAGCAGAGAAAAGAGGGCCAAAGAGAGCAGAGGCCAGCCTGGGCAATCTCATGACCTTTGTCATGTGGCTAAACTCTCAAAACCATTCGGGGGCCCGCTGTCCAGGCAGCCTGCCTATCGCCGAGCTGGACAGGTTATTGGTTGCCTTCTTCCAGTATGTGTGGGAGGAGTCCCGCCTGCAGGCCCTGAGCAGCAGCACTCTTACGACATACGCTCGTATGCTGGACCGTGATCTGCAGAACCAGGGCTGCAGCTTCAGTATCCGGAAGTCAGCCGAGTTCACAAACACCATTAGGGAACTGGATAGCTGCTGCCAGCACTtgaaacagagagagtgggacagagataTCCTGGTGATCCAGAGcttgaggagagaagaggaggctgCACTGAGGCAGGCAGGGGTCCTGTCTAGGGCCACACCGGATGGGCTGCTCAACCTGGTCCTGCTCAACAACCTCAAGGCCTTTGGGAAGTTCCACCTCCAGGGAGTCTGGCCCGGGCGAGTCTCCGACTTTCACACGGCCACGGAGACCCACCCAGGGACGGGCGACAGGGAAAAACTGGAATACCTGGAGTGGAACAATACTAATTTCCCAGAACAGAGCCCTGTACGGATGCACGGCCTGGCCGACGACCCAGAACGCTGCCCCCTGTGGGACTACAAGCTCTATGTATCCAAGCGTGTTGGAAGCCACCTGATCGCCTCTGATGCAATGTACTGTTGCCCACTGAGCCAGTATAGGCCCTGGGATAATTACTGGTTCAGCCGCCATGCCATGCCCAAACCTCGCCTGGAAAAGATGATTAAGTCTCTGAGCCACCATATACTCTCCGTTCGTAATGGGAGGGCAGCAGCCGCATATTAGTCAGCAGGTACTAATAGAAGAACATTGATTGTATTTtaaatgtatactgtatgtgcatACATACATTCAAAGTGTGATATCCTAGCATGACGTGTGTTTAATTATACCATTGAATGTTGTATGCTATGTTATGGTTGAAATACTCATAAATGGTATTACAAAAAAAATCTTATATTCATGACAATGATTCCTCATATTTCTAAGTTACACCAGTCTCCAGCCACTCTCATAACTGAATGAAGGTTATTTGCATTAACTCGTGTCATAAATACTGTTCTCCTAAATTACATACTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16113 lncRNA upstream 29459 14962746 ~ 14964478 (+) True G13637
TU16142 lncRNA upstream 75357 14917450 ~ 14918580 (+) True G13665
TU16138 lncRNA upstream 82589 14910918 ~ 14911348 (+) True G13661
TU16135 lncRNA upstream 84844 14908801 ~ 14909093 (+) True G13658
TU16106 lncRNA upstream 118334 14875368 ~ 14875603 (+) True G13630
TU16202 lncRNA downstream 1326 15004753 ~ 15005137 (+) True G13716
TU16215 lncRNA downstream 37555 15040982 ~ 15041302 (+) True G13728
TU16218 lncRNA downstream 39466 15042893 ~ 15043157 (+) True G13731
TU16238 lncRNA downstream 55162 15058589 ~ 15058883 (+) True G13750
TU16245 lncRNA downstream 61581 15065008 ~ 15065280 (+) True G13757
XM_036947517.1 mRNA upstream 498089 14350545 ~ 14495848 (+) False LOC110486505
XM_036947567.1 mRNA upstream 498089 14350545 ~ 14495848 (+) False LOC110486505
XM_036947684.1 mRNA upstream 498089 14429748 ~ 14495848 (+) False LOC110486505
XM_036947621.1 mRNA upstream 498089 14431701 ~ 14495848 (+) False LOC110486505
XM_036947732.1 mRNA upstream 498089 14464252 ~ 14495848 (+) True LOC110486505
XM_021559606.2 mRNA downstream 12711 15016138 ~ 15019092 (+) False LOC110487655
XM_036948429.1 mRNA downstream 12998 15016425 ~ 15019092 (+) True LOC110487655
NM_001160664.2 mRNA downstream 20992 15024419 ~ 15026535 (+) True elav1
XM_036948626.1 mRNA downstream 71757 15075184 ~ 15080304 (+) False LOC110487930
XM_021559962.2 mRNA downstream 71780 15075207 ~ 15079441 (+) False LOC110487930
TU16116 other upstream 31934 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 181313 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 293207 14700176 ~ 14700730 (+) True G13391
TU15839 other upstream 313910 14679698 ~ 14680027 (+) True G13381
TU15838 other upstream 314359 14679350 ~ 14679578 (+) True G13380
TU16507 other downstream 456477 15459904 ~ 15467988 (+) True sass6
TU17062 other downstream 691614 15695041 ~ 15715682 (+) True LOC110490510
TU18087 other downstream 1575659 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 1913072 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 1959630 16963057 ~ 16967790 (+) True LOC110492876

Expression Profile