RNA id: XM_036951722.1


Basic Information

Item Value
RNA id XM_036951722.1
length 1473
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110490377
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15622518 ~ 15636224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAATTACAGGTTGTTAACCTGCTGAAATCAATACAGTGTAGCGGATACACCTGTTGGAATTTGGCACTGTACAACTTCAGAGAATTATAACCTGTAGCCTATTCCTTTTAGCCAGACGTGATCATTGACGATTCCCTCTCCACCGCAAAATGACTCACCCAGGGATTCTCCAGCAAAGCGGATTGAGGAGCCGAAACATGTCCCGTCAGCGGATTTGAACTGCACGGTACTTAGATCTCCACAGGGATTTTTTTAAAGTATATTATTTACAtgtttattattataatttaccCTTAAGAAACTCCGAAACGTGTAATAGTTCACCATGGGAATCTCAGAACTACTTGACAAACTTCGAGATCGCGCAGATACATTTCTAAATGAGAAAAACATAGTGACAGATTTCCTTGGGAAACTGGAGGAGAAAACGGGGATCAAGAAAAAATGTTTTGCCGTAGGTGCAGTGTCTCTGACAGGACTGTATTTGGTATACGGCTATGGCGCCTCCCTCCTCTGTAACATGATTGGTTTTGTGTATCCTGCATATTATTCAATCAAAGCCCTCGAGGGTAAAAACAAAGATGATGACACAAAATGGCTGACCTATTGGGTGGTCTACGGAATCTTCAGTGTGGGGGAATTCTTCTCCGACATCTTCCTTTATTGGTTTCCTTTCTACTATGCTTTCAAGtGCTTGTTTTTGTTGTGGTGCATGGCCCCCGTTGCATGGAACGGCTCTCAGATCCTGTACAACCGGGTGGTGCGACCCTTCTTCCTCAAGCATGAGGCCACTGTGGACAGCATGGTCAATGACCTCAGCGGGAAAGCCATGAACGCAGCCGAGTCCGTCACCAGGGAAGATCCACAGGTAGAGGCATCGTCTCAGTGATGGTACTGAAGACAGCAAACCAAACCATGCCAGATTCACCGGAGGGACTTTGGTTTCCATGTTGACTTGCAAACTGCTGAACCACTTATACTTGATGCCCTATGGTGGGAAAACAATGAAACAAATCTGACAGAGATGGGATACCATTACACAGACAGATAAcgggacaggaaacacacatagcCAAGCTTCATATCGACCAAAACCACTGCAGCTGAAAATCACTTCACAGCCGCGTGATCGTGTGTCTGGTCAGTTGAATGCTATGCAATGTCTGATATTTTGACCTTCTCATCACCTGATTAGAGTAACTGAATTTGTCTGATAGGTCTTTGCTTTACAATCAATGTCCTTGTCTTCCGAGAAGGGAGTGTGTGGGCTCAATGCTTCAACAATAGGCACAGTGTTCTAGTCTTAGAcctctttgtttttgttttcacaTACTTCATTGTGCTGAATTAAATATTTATTCATCATTGtcttttgtttctttttttttatttgaacatgtttttttctctttttgtctTGTAAAATTGTATTATAGTCAGATCTAGGCTGTATTAAAATGAAATTGCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17020 lncRNA upstream 6681 15615571 ~ 15615837 (+) True G14418
TU17019 lncRNA upstream 7001 15615305 ~ 15615517 (+) True G14417
TU17017 lncRNA upstream 10884 15611073 ~ 15611634 (+) True G14415
TU16963 lncRNA upstream 91157 15531001 ~ 15531361 (+) True G14365
TU16957 lncRNA upstream 93875 15528330 ~ 15528643 (+) True G14359
TU17030 lncRNA downstream 1356 15637580 ~ 15638046 (+) True G14427
TU17497 lncRNA downstream 407158 16043382 ~ 16044075 (+) True G14858
TU17532 lncRNA downstream 451745 16087969 ~ 16097568 (+) True G14888
TU17543 lncRNA downstream 478589 16114813 ~ 16124751 (+) True G14897
TU17578 lncRNA downstream 548993 16185217 ~ 16185549 (+) True G14932
XM_021562998.2 mRNA upstream 16039 15595313 ~ 15606479 (+) True LOC110489937
XR_005053642.1 mRNA upstream 23303 15599090 ~ 15599215 (+) True LOC118966758
XR_005039836.1 mRNA upstream 67048 15552115 ~ 15555470 (+) True LOC118944451
XM_021562404.2 mRNA upstream 100729 15508762 ~ 15521789 (+) False LOC110489630
XM_036950655.1 mRNA upstream 100729 15508762 ~ 15521789 (+) True LOC110489630
XM_021563971.2 mRNA downstream 58586 15694810 ~ 15716774 (+) False LOC110490510
XM_021564171.2 mRNA downstream 274909 15911133 ~ 15919924 (+) False LOC110490675
XM_021564225.2 mRNA downstream 274909 15911133 ~ 15919924 (+) True LOC110490675
XM_021564309.2 mRNA downstream 284277 15920501 ~ 15922085 (+) True cart1
XM_021564067.2 mRNA downstream 286279 15922503 ~ 15975856 (+) True LOC110490588
TU16507 other upstream 154530 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 660515 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 809894 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 921788 14700176 ~ 14700730 (+) True G13391
TU15839 other upstream 942491 14679698 ~ 14680027 (+) True G13381
TU17062 other downstream 58817 15695041 ~ 15715682 (+) True LOC110490510
TU18087 other downstream 942862 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 1280275 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 1326833 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 2017983 17654207 ~ 17665008 (+) False LOC110495874

Expression Profile