RNA id: XM_036967246.1


Basic Information

Item Value
RNA id XM_036967246.1
length 1893
RNA type mRNA
GC content 0.43
exon number 8
gene id rfxank
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20919626 ~ 20922933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATATCAGGAAGTTGGAGTGAAGAATAAAACATTGATGTTGCTATTTTATCCGATATTGTGAGCTGGACATATAAACCATTGCTTGCGACATAAAGGTGTGATGGTGCCTACAGAGAACATGGGTGTGGATGAGGAGGAGAGCCTGTTGAAATACTCCACCACCCTCACGAATAGGCAGCGTGGGAACGAGGTCACAGTCAGACCAGCTACTTTAGACATTCTGTCCATCCACCAGCTAGCTGCCCAGGGGGAGGTCTTACAGGTGTCCACACACCTGAGCAAAGACAGTTCATTATTAAACCGGCAGGATGAACGGGGCTTAACTCCTCTCATGTGGGCAGCAGCGTTTGGAGAGAAAGCCATGGTGGATTTCCTCCTGGAAAACGGGGCAGATCCTAGTACGATAGCATGGGAACGGGAGAGTGCCTTGACCCTGGCGAGCTCAGGAGGCTATGCAGTCATAGTGAAACGTCTTCTTGAACATGGAGTAGATATCAATGCTTATGACTGGAATGGTGGTACTCCTCTCCTTTACGCTGTTAGAGGGAACCATGTAAGGTGTGCTGAGGCCCTCTTAGATAAAGGGGCAGACATGAACATTGAGGCAGATTCTGGGTATAGTCCAATGGCCTTAGCTGTTGCCCTCGGACACAAACAAGTCCAAAAGGTGTTAGAGGACCATATTCTGAAACTCCTGAAGAAAAAAGCATGACACCAGCTAAGGGCACCAGGATGTGGTTAGAGAGGACGTTGTGCTGAACAGAGGATCACCTGCTGGCATCAGTGGTGAGGTGGTTGACCAAAACACTGAAGCCACAAAAGGCGGTTGGTTGGTAGTGAAGACACTTGGAACGGAAGCTCCAACGTTAAGGGACACTGTGGTTCTTATCTTGTACATTTATTCAACATGTTTTTTATATTATGGAAATGcttatatttctttttttttggggggggggggcaaactaTCTTTAAATATCTATTTAAAAAAACTGGAGGTTTTGCACCAATGGATAGTAAACAAATGTTCAAAAACAAAATGCATACACATTTTACGATGTTCATTTGGAATGGGAAATCAAATGCACAGCACAAGCATTTGAATATGCAGGTGGTTGCATGACCTTAAAGCCTGGAAAGCTGCAATAAAATCCAGATTCTTTGTCTGAGCCAAATCCTCCCTTTTCCCTTGTTGTTTGTGTGCGCAAGCAGGTAACCAACTTAAAATGTCCTCACCAAAAGCAGTCAGATATGGTTCCCATTCAAAACAATTGATTTGGGGTGGTAGTCTTCCAGCAGTCATGTTATTCAATGGCACTATACCCTCTCGTTCCctatatgtctctccctctctcacacagaaACAGAAATGTCACAAAGCTCTTTCCCCCAGGATGTCCAAGGAGTAAACAATTATTCTGCCAAAGAAGTCGGCACTGTTCTCAAACACTATTTGTAGCTTGTGCACCGTGGGGACCTCCTGGATGGGAAATCTGGGGGTGTGGAGTTAAGAACCAGATAAGCAGAGGAGTAATGAAAGAGAACGGCACAGAACAATGTTAATTGAAAGCTGCTCTGTAGCTACTATGCATTAAAATCAACATTTCTGTATTACAGTATTTAGGTCCAGGCATAACTTTTCTGTACTATTACAACTCATTTAAGCAATTATTACAACtaagactagtgtcctgtccaggcgGTGCAGTTCTACATCAAGCTCCCTCACATTTGAATTACAAGGCCATTCTGTCTCGAACAAGACTTACTACAACTAATTTGAACTGGTATGATTTTAGAGACATTTAATAATACATTGAAGAATATTTGTAGTGAGCTGCTGTCTTCTGGGTAAAAATCTATGATTTTAGCCAAGTCTCCATCTTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23680 lncRNA downstream 56433 20862022 ~ 20863193 (-) True G20307
TU23667 lncRNA downstream 66743 20852451 ~ 20852883 (-) True G20299
TU23641 lncRNA downstream 110041 20809355 ~ 20809585 (-) True G20273
TU23640 lncRNA downstream 111513 20807885 ~ 20808113 (-) True G20272
TU23589 lncRNA downstream 196008 20723140 ~ 20723618 (-) True G20224
TU23809 lncRNA upstream 151997 21074899 ~ 21080084 (-) True G20419
TU23813 lncRNA upstream 162566 21085468 ~ 21089250 (-) False LOC118945319
TU23833 lncRNA upstream 162566 21085468 ~ 21089250 (-) False LOC118945319
TU23820 lncRNA upstream 163275 21086177 ~ 21089250 (-) True LOC118945319
TU23844 lncRNA upstream 171421 21094323 ~ 21094522 (-) True G20423
XR_002470964.2 mRNA downstream 17587 20885537 ~ 20902039 (-) True LOC110506380
XM_036967166.1 mRNA downstream 76715 20586586 ~ 20842911 (-) True LOC110532063
trnaa-agc mRNA downstream 391802 20527752 ~ 20527824 (-) True trnaa-agc
XM_036966919.1 mRNA downstream 437814 20367990 ~ 20481812 (-) False LOC110506262
XM_021586079.2 mRNA upstream 4907 20927809 ~ 20932452 (-) True tmem221
XM_036967735.1 mRNA upstream 65154 20988056 ~ 21005209 (-) False LOC110532071
XM_036967785.1 mRNA upstream 65154 20988056 ~ 21005209 (-) True LOC110532071
XR_005040481.1 mRNA upstream 164466 21087368 ~ 21089176 (-) False LOC118945319
LOC110507379 mRNA upstream 205285 21128187 ~ 21133777 (-) True LOC110507379
TU23634 other downstream 119618 20799120 ~ 20800008 (-) True G20266
TU21902 other downstream 1287009 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 2033974 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 2524766 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 2528093 18390123 ~ 18391533 (-) False LOC110497762
TU23821 other upstream 162396 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 162396 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 162566 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 162566 21085468 ~ 21089250 (-) False LOC118945319
TU23832 other upstream 162566 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile