RNA id: TU23821


Basic Information

Item Value
RNA id TU23821
length 1054
RNA type TUCP
GC content 0.43
exon number 4
gene id LOC118945319
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21085298 ~ 21089250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTTTATTTTTGCAAATACGTtcactttatttgtattttttaccaCAAAATAATGAAATATGCAGCATCCCTTAATTTTTACATTAAAAATAGTTATTACAATCAATGATATGAGCATTATATGGATACAAGTATGAAGTTGAAGTGCAAAGGCGTACAAAATCTTGAGCAAAATGAAATatattacttttaaattcattACTCTAAATGATCCCTTAGGGCCTCAACCAATATCCACATAACACTAGTTAAAACATATTTCATTTTGATCTAATAAaactattcaaaataaaaaatccaCCTTGTATTAACTCACCTTTCCATGTTAAGACTCCACCTTACCTGTCCACAAATAAAAACTAGGTGATCAACTAAATCCTCCGGTCTTTTTACTGACCCTTATTCCAATCACAGAGGAGGCTTTACCTCTTCTCTGTgtctggtcaggtcaggtcaggtcaggtctggtcaggtcaggtctggtctggtctggtcaggtctggtcagtTCAGGACATTAtgctggtcaggtctggtcaggtcaGACCAGGTTGTATGCTgttcaggtcaggtcaggtcaggtctggtctggtctggtcaggtctggtcagtTCAGGACATTAtgctggtcaggtctggtcaggtcaGACCAGGTTGTATGCTgttcaggtcaggtcaggtctggtcaggtcaggtctggtcaggtctggtctggtcaggtcagGACATTATGCAGGTCTGGTCAGTTttggtcaggtctggtcaggtcaggtcaggacaTTATGCAGGTCTGGTCagttctggtcaggtctggtcaggtctggtcaggaCATTGATGCTTGATCCGTTCACTGCATTGCCATTGTAGCCTCAGCATCTGAAAATACACAAGACAACAGAAGAATCTGATTAGGACAATGAACATTTCTACATGGACAGTAAACCTGTTCAAATCCAAACATCTAAAACATCAGCACGCGTTGATTGACAGTTTAGTGCCCTCAGATCATGTACACACGTGCAGTgtgacgttgtgtgtgtgtgtcatctccC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23809 lncRNA downstream 5214 21074899 ~ 21080084 (-) True G20419
TU23680 lncRNA downstream 222105 20862022 ~ 20863193 (-) True G20307
TU23667 lncRNA downstream 232415 20852451 ~ 20852883 (-) True G20299
TU23641 lncRNA downstream 275713 20809355 ~ 20809585 (-) True G20273
TU23640 lncRNA downstream 277185 20807885 ~ 20808113 (-) True G20272
TU23844 lncRNA upstream 5073 21094323 ~ 21094522 (-) True G20423
TU23846 lncRNA upstream 31652 21120902 ~ 21121351 (-) True G20425
TU23878 lncRNA upstream 85234 21174484 ~ 21175171 (-) True G20456
TU23984 lncRNA upstream 221555 21310805 ~ 21312539 (-) True G20557
TU24100 lncRNA upstream 267958 21357208 ~ 21357457 (-) True G20666
XM_036967735.1 mRNA downstream 80089 20988056 ~ 21005209 (-) False LOC110532071
XM_036967785.1 mRNA downstream 80089 20988056 ~ 21005209 (-) True LOC110532071
XM_021586079.2 mRNA downstream 152846 20927809 ~ 20932452 (-) True tmem221
XM_021586194.2 mRNA downstream 162365 20919626 ~ 20922933 (-) True rfxank
XM_036967246.1 mRNA downstream 162396 20919626 ~ 20922902 (-) False rfxank
LOC110507379 mRNA upstream 38937 21128187 ~ 21133777 (-) True LOC110507379
LOC110511465 mRNA upstream 103094 21192344 ~ 21193157 (-) True LOC110511465
XR_005040883.1 mRNA upstream 143532 21232782 ~ 21242022 (-) True LOC118945781
XR_005040908.1 mRNA upstream 268485 21357735 ~ 21362639 (-) False LOC110507674
XM_036969142.1 mRNA upstream 268485 21357735 ~ 21362641 (-) False LOC110507674
TU23634 other downstream 285290 20799120 ~ 20800008 (-) True G20266
TU21902 other downstream 1452681 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 2199646 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 2690438 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 2693765 18390123 ~ 18391533 (-) False LOC110497762
TU24399 other upstream 446683 21535933 ~ 21547773 (-) True LOC110507736
TU25520 other upstream 1292620 22381870 ~ 22382208 (-) True G21993
TU25921 other upstream 1750595 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 2534776 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 2733450 23822700 ~ 23826491 (-) True LOC110511130

Expression Profile