RNA id: XM_036989487.1


Basic Information

Item Value
RNA id XM_036989487.1
length 4328
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC118966683
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37670849 ~ 37675533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggactcattccctcccaaactaaaaggagaaaccaatgttttctctggtaggcacaacctacctggcacccctataaaaaataacctcaagtcaaaaccgttacataaAAAATGGCACCCCAGATGGGACAGCTCAACATTGAGAACTAACCAAAGCAAATATTTTGTGTGGAATTAAAACAATGGATTCACCCCAAGATAATGTGCTCATCCATTTCATACCTGTCAATGGGAATACACAGGGCCATTCTGACCATCAAGCTGACAACACAAATCATAATGGGAATGGAGATAATGGAGTTGATTTGGGCCAGAGCCCTGGGAATCTGAATGCTCGGTCTGGACCACAGGCCACAGGCGGTCTAAGCAGTTACTCACTTATTGACATGGATCTGTGTGAAAGTACTGAGCCAGCCCTCCATCTGACACCCAACCTTCCTCCATTGTCTGGTTTATCTCCAGAGGTTGTAGTTTTACAACTTCAAGGTGACATCCTTGATATTCGTCGGACTCaacaacatctccaaactctTATCCACGATAAATTAAAATGTCTGAGGGAAGAGCAACAACAGAGTGCCATGGAATTCAGAAACTCACTGAGCACTCtaacccacacactgacagagctcagtGAGAGTGGAAGACGGGAAATTACTGGTGCCATGGACAGGCAGTTTCACTACCAACGAAACCAACTCACTGCCACTCTCCAATGGCGCCTGCAACATCATCACACTGAGGTCCTCAAGGACGTTAATTCTGTTTTTTCTCCCATGGTTAACACTGTAGACCACTTGCAAACAGAGCTCTCTAATTGTGTTAAAATGTTGGATGACGTGTCTGTGGACATGGCCGCCATTAGGCACAACTCCTTACACAGAGTTTCTCTGGTGTCCACTTCTGTTCAGACCACTGAGGGCCAAGCTGGCACCTCTGAAGAGCCAAGACAAGGCCATGCTACAGCCACCCCTTGCAGGATGCAATCCACCATGCATCCTGGTGTTCATTTTCATTGTCCGATAACGCCCTCCCCCTCTACTTCCTCAATCCCTCCTAGCTCGTTTGTTCATGGTGAATTGAGTAGATGTCATGTGGGGGCGATGCCCATTAAATTGCAATTTCCCACCTTTGGGAAAAAAGATGACAGTCCGGATCCGCTAATGTACCTAGAAAGATGTCGTGACTTTCTTGCCCTCAATCCCCTGGCTGACGAAGAACTCCTTGCCACATTGAGGAATGTGTTGCATGGGACAGCTCGAGACTGGTGGGATGTGGCACGTCTCACCACTACCTCCTGGGCTGACTTTGAGGCCAAGTTTTCCTCTGCATTTCTGTCTGAGGACTACACAGATGAGCTGGCAGACAGAGTCAGGAATCGAGTGCAAAGCGAGAAAGAGGGTATCCGTGACTTTGCATACGGTTACCACTCCCTGTGCAGAAGGTGGAAACCTGGcattgaggaggaagaggtcattaAATTGATTTTGAAGAACATCAACCCACTACTAGCCAGTCAACTCCGAGAACGAGTCACCACTGTCGATGGACTGGTTCGCTTGGGACAGCAGtttgagagggacagagaatgccaacagcaatatgaccaaagaAAGAAACAGACACCCAAACCGTTACCCAAGACAGACCATCAACAACAGCCAGAGTCTCAAGCCATGACCCCTCTCATGTTCTGTTGGAGATGTAGCCAAAAGGGACATTCTTCAGCTACATGTCCAAGACCGTATCACGAAAACCCTTCCAGAAACCACAAATCACAACAGgccaacacacctaactctcttcGCAGGAATGACCATCCTTCTCTGGGTGCTTTAACCAGAGCTGAAATCCCAAGAGTCACTGCCTACGCCCCCCCATCGACATCCCCTTCCTTTCAGTTCATACCGCACCAACTGGTGTTACCCCTGTCCATAGGCCCATGGACAGGAAGAGCCATCCTGGACACCGGGTCATCCTACACACTGCTCAATGAGAAACTGTGGAAGGAGGTTAAAGGTCCGCAATACAACTTGAAGCCGTGGACAGAAGGTCCACTCTATCTGGCTGATGGTGAGGCTAAACGACCACTTGGATGGAGTGAGATAGAGTTCCGCCTGTGTAACCGCTCCTATATGATTCCTTCGGTTATCCTACAAACCAAGAACCTTGCTTTTCCTGTCGTGTTGGGAATTGATTTCATGTACTTCAGTGGTGTCCAGATTGATATCGCACACAATTGCTACTGGTTTCCATACAATCCGAGCAAGAAGCATTTCTTCCAATCAGAAGCTACGAAGTTCCATGATTGGGGTTCAAATGTAGCAGTCTTCTCTGCCGTTGCTCCGTTACCACTAACCCTTGATAATCCTTCTGACGATCTCCTTTTACAGGCTGTAAGAAGAGCTCAGCTGGAACATCCAGAGGAGTTAAGGCTGTTGGAACAGCTGCAGAATAATGCTGATGTATGTACTTCAAGGCTAGGACGCACCGGGCTCCTGAAGCACAAAATATTCCTTACACAGGAAATGCCGATCAAGCAAAAGCCATATCGTTTGTCCCCAGCAACGCTAATCATCCAAAAGGGACTCATTAATGATATGTTAACACAAGATATAATAGAACGTTCCTCCTCtccttgggctgctcctgttgtcctCATCCCAAAAAAGACTGGTGGTCTCAGATTTTGTGTGGACTATAGGAAGACCAACAATGTTTTCCAGACTGATGCCTATCCTCTTCCTACCATCCACGAGATCCTGGAGTCATTGTCTGGCGCTGTTGTGTTCACTACCCTTGACCTCAATAGTGGTTATTGGCAAGTTGAGATGGACCAGGAAAGCAAGGACAAGACTGCTTTTGTCTGTGCTGAGGGCTTGTTTTCCTTTAAGGtgatgccttttggattaaagaATGCACCTGCCACTTTCCAAAGACTGATGGAGATTGCGTTAGGTGAGCTCAAAGGGAAGATCTGTTTCGTCTACCTGGACGATATAATTATCTACTCCCAGAACAGAGAACAACACTTTCAAGATCTTCAAGCAGTGTTGGACAAGCTAAGAGAAGCTGGTCTGACCGTGAATATGAAGAAGAGCAACTTCTGCCAAACTTCCCTGAAGTTCCTTGGCCATATTGTGTCTTTCGACGGCATTCATGTGGATCCTGAAAAGACCAAGGCGGTACAAGATTTTCCTGTGCCAACCACACTCAAGGCCCTTCAACGGTTCCTTGGGATGGCTGGATGGTACCATCGGTTTGTGTCAAACTTCTCCCAGGTGGCAGAACCCCTCAACGCGTTGAAGCGAAAAGGAGTGAAATTCCTATGGACGGCAGAGTGCCAGACATCCTTTGAAACCCTGAAACGACACCTCGTCACACCTCCCATTTTAGGTCATCCCAACTTTGATTCCCCTTTTGTTGTTTACACTGATGCAAGTGATGTTGGACTTGGTGCTGTCCTAGTCCAACAGACTGGACTTGGCACTGAAGAAGTGCTAGCGTTCGCCAGTCGGACATTGAATGGAGCAGAATGGAACTACTCCACAACCGAGCAAGAGTGCCTTGCAGTTGTCTGGGCTTTGGAAAAGTGGAGGTACTACCTGGAGGGAAGACACTTCACTGTGGTCACTGACCATTCCTCCCTTGTGTGGGTGTTCAAGACCAACAAACCAAGCACCAGACTCATAAGATGGGCTCTACGGTTGCAAGAGTTCACCTTTGCAGTAGAATACAGGAAAGGAAAATACAACACTGTTCCAGATGCCTTATCCAGGGCTCCTGCTTGTGATAACGGTGGCCCTCATTTTACATGTGCTACTGTCCTGTCAAGCAGTCGAGACTCGCCCAAAACAGACTTTCCCATCTCTGAGACCATATGGAAAGCCCAACAGGATGATCCAGAAGTACAGGCTTTGTACCAGACTATCCTGGAAGATGGAGAAAAGATGGTCAATCCTACCACAAAGCTGACCATCATGGAAGACAAAGTCTACCGTGTTTGGGTGGAACTCTTTTCCCTGCGTCAGGCCACAGCAAGGACCGTCTCTAACATCCTTACGAAAGAGATCCTGACTCGCTGGGGAGTGCCTGATTACATCCTGTCTGATCGAGGTTCCCAATTTGTCTCTGATCTCTTTGAGGAGACCTGCcaaagatggaacctgagacagAAGTTGACCACGGCCTATCACCCACAGACCAATCTCACTGAGAGAGTAAATCGAACCTTGAAGACAATGATTGCTTCCTATGTAGGGACCCAGCACAAACACTGGGACAAGCACCTTCACAAGTTTCGATTTGCCCTGAATTCTGCTGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45036 lncRNA downstream 98989 37571522 ~ 37571860 (-) True G39904
TU44989 lncRNA downstream 136791 37533836 ~ 37534058 (-) True G39857
TU44988 lncRNA downstream 137852 37532552 ~ 37532997 (-) True G39856
TU44981 lncRNA downstream 144446 37525861 ~ 37526403 (-) True G39849
TU44979 lncRNA downstream 146260 37524369 ~ 37524589 (-) True G39847
TU45184 lncRNA upstream 10021 37685554 ~ 37691937 (-) True G40049
TU45198 lncRNA upstream 28246 37703779 ~ 37704012 (-) True G40063
TU45221 lncRNA upstream 46414 37721947 ~ 37722176 (-) True G40086
TU45268 lncRNA upstream 81663 37757196 ~ 37757454 (-) True G40133
TU45286 lncRNA upstream 95452 37770985 ~ 37771257 (-) True G40151
XM_021600689.2 mRNA downstream 273215 37380568 ~ 37397634 (-) False LOC110522348
XM_021600697.2 mRNA downstream 273215 37380568 ~ 37397634 (-) True LOC110522348
XM_021600666.2 mRNA downstream 323206 37287556 ~ 37347643 (-) False pdhx
XM_021600676.2 mRNA downstream 323206 37287556 ~ 37347643 (-) True pdhx
XM_036977062.1 mRNA downstream 328774 37287556 ~ 37342075 (-) False pdhx
XM_036989498.1 mRNA upstream 848 37676381 ~ 37681639 (-) True LOC118966685
XM_036989509.1 mRNA upstream 7111 37682644 ~ 37687745 (-) True LOC118966688
XM_036989519.1 mRNA upstream 13217 37688750 ~ 37693851 (-) True LOC118966689
XR_005051686.1 mRNA upstream 385556 38061089 ~ 38061663 (-) True LOC118964577
XR_005051684.1 mRNA upstream 390426 38065959 ~ 38066605 (-) False LOC118964575
TU43930 other downstream 1160020 36508538 ~ 36510829 (-) True G38855
TU43851 other downstream 1261830 36370094 ~ 36409019 (-) True LOC110522187
TU43028 other downstream 1948793 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 2087241 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 2229521 35440918 ~ 35441328 (-) True G37907
TU45214 other upstream 41007 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 449747 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 511955 38187488 ~ 38191736 (-) True G40768
TU47067 other upstream 1346272 39021805 ~ 39022025 (-) True G41868
TU52237 other upstream 5363195 43038728 ~ 43129029 (-) True tspan9a

Expression Profile