RNA id: XM_036978528.1


Basic Information

Item Value
RNA id XM_036978528.1
length 6857
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC110523913
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45987946 ~ 46025205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccaaatatttttagcaGTCAATGCTGGCGTCACTGGCGTGAAATGACGGGTTTGAAAGTAAATATTCTGACGGTGTCGTATGATTTATCAGTTCGGGTTTTTTTTCAATGGGAGACGTTTGTTTTGTCAGAATGACTGAACTCACTACTATGGATATGAGTGCATCTTTAATTTTTCGCAGATAATAGCTTATTACGCGCTAGCAGGTCGACGTGGTGCATGGAGTGTGCCCTACAGACGCATTACACACAAGTGTCAATGCTGCCGTTTTGTGTCAACCTCTGGGAGAGACGGGCTTACGCAGAACCTCTCATTGTCCGCAGTGAAGGATTgatcaaatgtattttacaagATTAAGACTGTTAGATGTATCAAGGATAAACAAATGGCTTCAAAACATGCGTGTAACAGCCTCGATGATTTGATCGCCAGCGGAATAAACAATGCTCGCGCGCTTGGTTCGATTGAATGGATAGGTATGGGGATGGGATCCACCTTATGTTTCCAGAAAAACGGAAAAACACTGGGGCTGAATCGAATGTGGACTAAATGTATTTTATCCGTTGGAATGGTTTTGCTTTTAATGCCGTCGGTCCTAGCTGCTGATGATGAAGGGCACTACAACGAGTCATCAAGGCATGCGGCTCTGCCTCAGGACCCAGCCGTGCCCTCTAACCTCTCTGCTAGGGTAACGCCAGTGGAGGACGGGCCCCGGGCCCCTCCAGCCATACCCACGGACCCAACAGACCCATCAGGGGTGACAGCAGAAAGCACCAGAGAGCAGCCTGTGCAACCATCCGTGCTAGCTAATGCCTCCTCCTTAGCCTCCTCCTCAGCCATCAACAGTGACAATCAAACAGCAGGAACAACAGACCCTTTGTCTTTAGCACCTGTAACCAACAGCACCTCAAACACCAGCCCAGaggagggagacagcagtTTGCCTGCGAACCCAGATTTACCTACAGTCCCAGTGTCCTCTCTGGCCACATTGGGGGAGAGCGACGCCACCCTCCCAGACAATGTGACTAGTCCTTTCTCCACTCACACATGGAACACCACTACACCTGCAAGGGCTGACACCAACACCACTACACCATCCACCACAGCAGCACACACCAACCCAACACCAGACACTGTGACCAATGACAGTCTACAGCTCACGACTGTGACCACCACGACCGTCACGCCCCTGACCGTGACCACCACAACTGTGACACCCCAGACCACCACAGCTTCGACCACAGAGGCGGTTACAACCACAACCTGGACCACTACGACCACACAGGAAGTGACCACCCTCCAAGAGACCACAGTGATGGCAACCACAACTGACCAAACCACGACCACAACCACAAccgctcccactacaaccacaattGCACCGACTACCACTTTgaccatccccaccaccaccaaagGAACAACCCCTGGACCGACCACAACCGAACCAACCCCCACCAGTCCTGAAGGGGAGCATCTACCATGTAACATCACTGAGAAGACCTGGGTCAAAACAGTTTTGTCCATGCAGCTGTGGAGGAACAGGCTTGATATCATGACAAGGCAGAATCTGTCTAAAGGACTCACCCATGCTCTACAGAGGGCCTTCAACGACACCAATGTTTATGTCCAGGTTGAACGGGACCTCTGCAGCCCTCATAATGTCACTCTTGGGTACTATGTAGCCAGTGGGAAAACGGTCTACATAGCATCTGTGGTGGTGGAGACAATGAATACCTATGGCTTTGACAAAGTGCTGGCAGACATCCGGCAGCACAGTCCTCTGGTGAAGGCTGTTCTGCTCCCTGTAGCCCCCTGGGCCTCCAGCCTCAGTGTCCATCTGCAGCTCAAAACAGTTCTCAGGTTTGTAGGCCCAGAAGACAATGTCAACTCCTGCAGTTTTGTTCAAATGATGGAACAACGGCTGGAGAATGCATTTGAGGAAGCTCAGGACAAAGTGCTGGAATCTTACAGCGGGCTTTCTGTGGAGATCCAGAGCACCGCCCAGGTGATTGGCTCTCCTGCCGTGTCTCTGGTCTATGTGGTGAAGAATGAGAACGCGGTGCTGAACGGAACCGTCTCCAGCGGTCTCCTGAACCAGCTGACCGCAGAGCTGGTGGGCTACTTCCTCTTCTTCCCCCCGCTCATCATCGCTGAGCcactagagtaccacaacctcaacacatCCACTGCCACAAAGCACTACTGGGTGATCACAGTAATTCAGGATGTTGACAGCTCTTCTCTGGAAGGGAATTATCAGAGCTTTGCTAGTTTAATGGAGCAGCGGCTGGCTGAGCTTTTTTTGGTGTCTGGGCGTCAGGGGAGTCAGGGGAGCCGCTTTAGAAGGGCCACCACCGTCGGGAGCTACACTGTCCAGATGGTTGGCATTCGTCGACTCCCGGGGCCTAAGAACTCAGCCGAAATGACCTACTATGCCCAACTGAATGGTGCCCCCATAACTGGCACCACTGCAGCTAAGACCCTCAGTACCTTGGATTCCCAAACCATGGCCCTCACTCTGGGCTACTTTGTCCTGCTCCAAGCTGATCCTGTGGTAAAGGGCCCGCCTGCCAATCTGTGGATCATGGCTGTGCTGACGCCTGTTGCCCTGGTGATGGTTGTTGTCGCCATGGTCACCGCCATCCTGTGCAAGAGGAACAGGGTCATCTTCAAGACGGGCGCTTTCAGGAGCTTCAAACCCCGCTCTAAGCATGTGCAGGGATTTGACTATGCCAAGAAGCACATAGGCCATCAGCAAGGTGAGGAGACCGTCTCTGTTACCAAGGAGACGCTGGTTCTGGGCCTCCCAGTGAGAGATGCCCCGTTGTCATTGGACAGGAAGGTGCACCAGGATGGGACTGCCTCTAAAAGACCTCCTTCTGCTGACATCATCCACAAAGGCAGGTTGCCAAGCGAGGACGGCTCGGTTGCGAGCAACGAATCCGGGAAACTCAACACGGGCAAGAGCTTGGCGGCACGGAGGGCTGCGGCACAGAAGAGCACCAAGGAGGATCTGCTGCACAAgaggagcgCAGATCCCTACGAGGACCACACCGGCTCACTGCGACTCATCACCATCAAGCCAATGGCAGCCCAGCCCACATACTCCTACCCATCCTCCTCCAGTCACAGCCAGGACTCTGTCGTCCTCAATGGGGAGGCAAACATGGGGCTCAAGCAGAAAACCGACATCGAACACTACAGGAACAAAGTCCGCCAGAAAGCCAAGAGAAAAGGCTACTGTGATTTCCCCATCACAGACAATGGCATCCACCCATACAACCCCAGAGAGAGGCACAGTAGGCCTGAGATGGCAAAGGAGCCAATGACTGCTGAGGAGAAGAGGGCCTCCTATGCAGGATGCCACATCAGGAGGCACCCCCCATCGAGAGAGCCAGCCTACTGGAGCCGTCAGTCCCTGGCCGCCAGCAGCCCTAGCCCCGTGGAGACGGAGATGGACCTGCTGGTCCTCAGGGAGAGGTCCAGGAGAGGCATCCGCAACAGCGGTTATGACGCAGAGccagagacgttccaggagaccAATGTGGACCGACTGATGTGCTCCCTGGGTTATGGTGGAAGCCATCAGGTCAAAGGTCTCTCGGACTCGTCCACTCTGAGCTCTCAGCCCTCCATCGACGAGGTCCGGCAGCAGATGCATATCCTGCTGGGTAATGCCTTTGGGCTGGCCCCAGACGAGCCCTCGCCTgccagccaccaccaccaccaccaccctcaccCCCACCTCCACAGTTCCTACAATCCCAGCCACACCAGCGCTTACTCCGAGGGTGTGACCAGCGCTCCTGGCACCATGAACCATCCATGCGGAGGAGGTCACCAGCGCGGGTCTGCCTACGGGCCGGAAATCCACCAGTGTAGCTTACCCAAACCTGGCTTCAGGTTCACTCAGCTTCCTGACATGGGCGTTGGACCCCCACCTCCTCTGATACCCTCCAGGCCTGGACCCCCTACCGGGACCTCAATGAGGCTTTCTTCACCCGATGTCAGCCTGAAGCCTCGTGTTTCCGAGGCCTCTGAGATGCAGAGTCAGCACAATGGTGCCCCCTATCTGCCTCTCAACAGAGCGCCCTTCCCTGCTGTTACTGTTGACCAGTCCATGACCAGCTACTCAGGAAACCCAATGACAGGAGTCTATGCCATATCAGCCAACCGCCCTGGTTACTCAGACTACTTTGTCATGCCTCCACCAGCGTCGTATGGAAGCCCATCCTGGATGTCCTACCCACCAGAACCCGAGGACATCCCACACCAGTGGAATGAGACTGTAAATACTAATCCGTGTCATTTAGAAACCATTTGTTGAGATTACATGATCTTTGGAGCTGAGTGGAGACAGCATATATTTCGGTGTCCTTTTGGTTAGGCAGTAGGGCCTCCCTCCCTCACATTGAGTACCCCTGGACTCGAGCACCCTGCCCTGCCCTTCTCCCCTGGCCCTGGTTACTGGCCCCTGGCTACTGGCCTCTGGCCTGCCTCCTCAGCCCAGCCAtgccctctctgctctgctctctgagCCCCAGGTCTCCCAGACCTCACAGCCTCCATGTCAACTGCCATCAGCCAGCAGAGGATGGCCTAGACTAGAGTACAGCAGCCCTATCCCCCATGGTAGTGCCACATACAACCTCTACCCTGGTCCACACCATCCAACGACAGGGATGGCAAAGCTGGACTAACTAACTGTGCTTTTTGATTCTCCAAATTCCTTAATGGACAGAAGACTTGTACCTACTACTGGTGGTTTGTgtgtattttaaaaaaaaaaactaacttAGTCTCTCAGTTTCAGTTGTTGGATATTCGTGTGCTTTGTCGTTTACTTTCATGCTTTACTTCTTTTTAAAAGGGGGAAATAATTGAGTGAGTGTCTGTTGTGCGCTCACCTTATTAAAAggcaaaagagaaaaaaaagaagaaaaaaccgTGCGAAGAAAGGCTTTAGTGTGAGTGGctatgtcattctgtatttttCAAATGTACTCATGACCTTTACCCAATCAGATTACagtaaaaaaacacaaaaaaaaacaacggTCACCTGTTCTGTTATTCATATGCTTATGAAGTTTGTCTACTGACCACGATTATGAAAAGATGAATAGAGTCGTATATTGCCGCACACAAATGATCTTACAATAGTTCTTCACGTGTTACGGTTTTGTATTTGGAGATTTTGACTTATATTGGGTCCTATCCTTTTCACTGGACAGAGTAGTATAGGAAGATGGGTGTCGGATGGGCCACAGGTGTGTTGATTAAATATATGATGTAACGTGAAGACATTAATTATTGAAGAGACTTGTGCCAgccgtgagagacagagagagagagcgagagatttgCTTGTATATTTTGACACCATTTTCTTTAGAAGTTGACTTGCTTTACTGCATTTTTTAATTTGAAGGATGGTCAGATTGCTTTCAATCCTATTTTCTAATTTGTCAAAGGGTACCAACACAGGATCACATAGTGTAAAACAAATAGCACATTTCGAATGTATTCATGTCGGTGCATATGCTGGTATATGCAAAATTACTCACTCGGTCATAACATAAGCAAAATGATGGATAATTCTATGTTTTACTAGTATTTACTGAGTTTTCAGGATCTCAAAACAAGGAAAACATGACGGCTAGGGCCCTTTACCATGTACTGTACATGCTACTAGTTCAGTTCATCAGTACAGTTAGGTGTAGATCAACAGCCaccaaaacatgttaccagatTGGGCGATGTGTATTACTGCGCTGACATTGCATATCTGATAATGACATAGCGTTGGAAAAGCTTTCACACTTTCGAAATAGTAACAGAATAAGGTCTAATCAATGTGATATAATTGGAAATAGAAAATACAGTTTGGTCTATCACAATGTAGGTACGACATTAGTTTAGTATGGATTAGATGAACATAGCACTTTCTTAGATTACCTGGCTCTACAAAACTGCAGTATCAATGTGAAGACTTTGTTAAGCATGCAATATTCATATTTGAAATAttagatttctttttttttttgattttacAAATTTTTTGAGCTATACTCAATGATAATGACGCAAATGCAAAGTCATTATCTAGTCCATTCGTTTGACTGGGTAGGTGTCTTTAAATGGATCTCAACTGTTGCTACCCAGTTTGACAAATGTGATTTGACTATTTTTCTACAAAATGATGAATCAATTATTTTTGGGAGATGTAGTTCCAAAAATGTATGCCGAATATTCCACAGGAAATATGATGACATTTTAAAAAGCTGAAACGCAAATACCTTTTTGAGAATCTATATGATGTGCTCTGTAACACTACCTTCCTTTTCACCTCTACtcatacatttgtaaaaaaaaaaattcctcTACCAGATTTGACTCACAATAAAAAGTTTCACTCAACAATGTGGATGAGACTTGAAAAGGAATCATAATGTAGCTTATACATTTAACATCTTGGCCTTTGTCGAGCACAAACCATTTggttggtgcttggaatcatcatcattatcacttGTATCGCTAAAAAGACAAAAGGTACTCCAGTTTGTTTCAAATAATATCATTGGTATGTTCACCCATATTTCAAGCTAATGAATGGAAAATATGATTGATTAAAAACAGTCAAAAGGAACAGGACAAATGAGTTGACACAAGTCGATGCACTGCTGATGCATCTTTCATCCGACACGTTTCTGAGGTGGAATGTGACGACAGGCCCCTGAGGCTTCTGAAGGCACAGGAGTTTGAATCATGTCATACAGAATGCAGTTGGATGTAGTTATGCAGAATTTGGGTGGAATAAAAACCAATAAATTACAACTTAGAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55841 lncRNA downstream 7450 45979652 ~ 45980496 (-) True G50001
TU55837 lncRNA downstream 10572 45977125 ~ 45977374 (-) True G49997
TU55817 lncRNA downstream 22680 45965058 ~ 45965266 (-) True G49978
TU55746 lncRNA downstream 48174 45881070 ~ 45939772 (-) True G49907
TU56156 lncRNA upstream 85449 46110654 ~ 46110971 (-) True G50262
TU56177 lncRNA upstream 131520 46156725 ~ 46159520 (-) True G50282
TU56203 lncRNA upstream 168289 46193494 ~ 46194056 (-) True G50306
TU56204 lncRNA upstream 169287 46194492 ~ 46194720 (-) True G50307
TU56255 lncRNA upstream 235870 46261075 ~ 46265574 (-) False G50357
XM_021603048.2 mRNA downstream 120848 45730235 ~ 45867098 (-) False LOC110523903
XM_036978487.1 mRNA downstream 120848 45730235 ~ 45867098 (-) True LOC110523903
XM_021603039.2 mRNA downstream 121254 45730235 ~ 45866692 (-) False LOC110523903
XM_021603012.2 mRNA downstream 307288 45632171 ~ 45680658 (-) True LOC110523892
XM_036978445.1 mRNA downstream 400865 45476653 ~ 45587081 (-) True LOC110523834
XM_021603083.2 mRNA upstream 573 46025778 ~ 46076731 (-) False LOC110523921
XM_021603074.2 mRNA upstream 573 46025778 ~ 46076741 (-) True LOC110523921
XM_036978555.1 mRNA upstream 60377 46085582 ~ 46097005 (-) False tcp11l1
XM_021603095.2 mRNA upstream 60377 46085582 ~ 46097106 (-) False tcp11l1
XM_021603103.2 mRNA upstream 60377 46085582 ~ 46097107 (-) True tcp11l1
TU55801 other downstream 37995 45948958 ~ 45949951 (-) True G49962
TU55610 other downstream 266822 45720805 ~ 45721124 (-) True G49774
TU52237 other downstream 2858917 43038728 ~ 43129029 (-) True tspan9a
TU47067 other downstream 6965921 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 7796210 38187488 ~ 38191736 (-) True G40768
TU57229 other upstream 1039569 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 1263734 47288939 ~ 47289681 (-) True G51285
TU57725 other upstream 1352436 47377641 ~ 47378543 (-) True G51649
TU57798 other upstream 1517171 47542376 ~ 47561209 (-) True LOC110524104
TU59011 other upstream 2268903 48294108 ~ 48304136 (-) True LOC110524264

Expression Profile