G49962


Basic Information

Item Value
gene id G49962
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45948958 ~ 45949951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55801
ggaacatacttgggagcaatttccaaacccctgaaggtaccacgttcatctgtacaaaaaatagtacgcaagtataaacaccatgggaccacgcagccatcatatcgctcaggaaggagacgtgttctgtctcatagagatgaccgtactttggtgtgaaaagtgcatatcaatcccagaacaacagcaaatgaccttgtgaagatgctggaggaaacaggtacaaaagtatcaatatccaaagtaaaacaagtcctttatcgacataacctgaaaggccgctcagcaaggaagaagtcactgctccaaaaccgcaataaaaaagccagactacagtttgcaactgcacatggggacaaatatcgtactttttggagaaatttcctctggtcaaatgaaacaaaaatagaactgtttggccaaaatgaccatcgttatgtttggaggaaaaagggggatgcttgcaagccgaagaacatcatcccaacagtgaagcacgggggtggcagcatcatgtgtgggtgtgctttgttgcaggagagactggtgcacttcacaaaatagatggcttcatgaggttggaaaatgatgtggatttattgaagcaacatctcaagaaatcagtcaggaagttaaagcttggtcacaaatggatcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcccatagaaaatttgtgggcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaacctgactcagttgtacgagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggccacccgacacgtttgacccaagttaaacaaggtaaaggcaatgctatcaaatactaattgagtgtatgtaaacttctgacgcactgtgaatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55801 True 994 TUCP 0.42 1 45948958 45949951

Neighbor

gene id symbol gene type direction distance location
LOC110523903 LOC106573225 coding downstream 81860 45730235 ~ 45867098 (-)
LOC110523892 LOC106573278 coding downstream 268300 45632171 ~ 45680658 (-)
LOC110523834 LOC106573224 coding downstream 361877 45476653 ~ 45587081 (-)
LOC118964648 NA coding downstream 471117 45476653 ~ 45477841 (-)
LOC110523755 NA coding downstream 534294 45325909 ~ 45414664 (-)
LOC110523913 LOC106573227 coding upstream 37995 45987946 ~ 46025205 (-)
LOC110523921 LOC106573228 coding upstream 75827 46025778 ~ 46076741 (-)
tcp11l1 tcp11l1 coding upstream 135631 46085582 ~ 46097107 (-)
LOC110524015 LOC106573241 coding upstream 787484 46737435 ~ 46743033 (-)
LOC110524028 LOC106561496 coding upstream 867105 46817056 ~ 46839553 (-)
G49907 NA non-coding downstream 9186 45881070 ~ 45939772 (-)
G49931 NA non-coding downstream 27513 45909035 ~ 45921445 (-)
G49872 NA non-coding downstream 68724 45879791 ~ 45880234 (-)
G49817 NA non-coding downstream 155761 45792152 ~ 45793197 (-)
G49777 NA non-coding downstream 224570 45724159 ~ 45724388 (-)
G49978 NA non-coding upstream 15107 45965058 ~ 45965266 (-)
G49997 NA non-coding upstream 27174 45977125 ~ 45977374 (-)
G50001 LOC106674859 non-coding upstream 29701 45979652 ~ 45980496 (-)
G50230 NA non-coding upstream 55348 46005299 ~ 46005507 (-)
G50233 NA non-coding upstream 65709 46015660 ~ 46015867 (-)
G49774 NA other downstream 227834 45720805 ~ 45721124 (-)
tspan9a LOC106573177 other downstream 2819929 42852829 ~ 43129052 (-)
G41868 NA other downstream 6926933 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 7757222 38187488 ~ 38191736 (-)
G40732 NA other downstream 7823233 38125280 ~ 38125725 (-)
G51214 NA other upstream 1114823 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 1338988 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 1427690 47377641 ~ 47378543 (-)
LOC110524104 LOC106573248 other upstream 1592425 47541224 ~ 47561223 (-)
LOC110524264 LOC106573263 other upstream 2344157 48291626 ~ 48304829 (-)

Expression


Co-expression Network