G49872


Basic Information

Item Value
gene id G49872
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45879791 ~ 45880234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55710
tttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagcgtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttccgtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgcggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaatgcactgtacctgCTAGAGCACGTGCCACGGGtgagtgttgctatggtgaccagtgagctgagataaggcggagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55710 True 444 lncRNA 0.41 1 45879791 45880234

Neighbor

gene id symbol gene type direction distance location
LOC110523903 LOC106573225 coding downstream 12693 45730235 ~ 45867098 (-)
LOC110523892 LOC106573278 coding downstream 199133 45632171 ~ 45680658 (-)
LOC110523834 LOC106573224 coding downstream 292710 45476653 ~ 45587081 (-)
LOC118964648 NA coding downstream 401950 45476653 ~ 45477841 (-)
LOC110523755 NA coding downstream 465127 45325909 ~ 45414664 (-)
LOC110523913 LOC106573227 coding upstream 107712 45987946 ~ 46025205 (-)
LOC110523921 LOC106573228 coding upstream 145544 46025778 ~ 46076741 (-)
tcp11l1 tcp11l1 coding upstream 205348 46085582 ~ 46097107 (-)
LOC110524015 LOC106573241 coding upstream 857201 46737435 ~ 46743033 (-)
LOC110524028 LOC106561496 coding upstream 936822 46817056 ~ 46839553 (-)
G49817 NA non-coding downstream 86594 45792152 ~ 45793197 (-)
G49777 NA non-coding downstream 155403 45724159 ~ 45724388 (-)
G49759 NA non-coding downstream 179913 45699156 ~ 45699878 (-)
G49619 NA non-coding downstream 400369 45476563 ~ 45479422 (-)
G49459 LOC108441480 non-coding downstream 428060 45435672 ~ 45451731 (-)
G49907 NA non-coding upstream 836 45881070 ~ 45939772 (-)
G49931 NA non-coding upstream 28801 45909035 ~ 45921445 (-)
G49978 NA non-coding upstream 84824 45965058 ~ 45965266 (-)
G49997 NA non-coding upstream 96891 45977125 ~ 45977374 (-)
G50001 LOC106674859 non-coding upstream 99418 45979652 ~ 45980496 (-)
G49774 NA other downstream 158667 45720805 ~ 45721124 (-)
tspan9a LOC106573177 other downstream 2750762 42852829 ~ 43129052 (-)
G41868 NA other downstream 6857766 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 7688055 38187488 ~ 38191736 (-)
G40732 NA other downstream 7754066 38125280 ~ 38125725 (-)
G49962 NA other upstream 68724 45948958 ~ 45949951 (-)
G51214 NA other upstream 1184540 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 1408705 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 1497407 47377641 ~ 47378543 (-)
LOC110524104 LOC106573248 other upstream 1662142 47541224 ~ 47561223 (-)

Expression


Co-expression Network