G49459 (LOC108441480)


Basic Information

Item Value
gene id G49459
gene name LOC108441480
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45435672 ~ 45451731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55261
cctgtggtaaatacaattgattggacatgattttgaaaggcacatatccgtctatataaaaggtcccacagttgacagtgcatgtcagcgcaaaaccaagccacgaggtcgaaggaattgtcctagagctccgagacaggattgtgttgaggcacacaTCTGCGGAAGGGTACCCCAAAAAAttatgtagcattgaaggtccccaagaagtcAGTggccatcattcctaaatggaagaaaccaccaagactccctagagctggccgcccagccaaactgagcaattgggggagaagggccttggtcagggaggtccccaagaacccgatggtcactgacagagctccagagttcctctgtggagatgggttgtccttctggaaggttcgccCATCTctgcaggtggactccaatcaagttgtagaaacatctcaaggatgatcaatggaaacaggatgcacctgagctcaatttcgagtctcatcgcaaactccaccaatcaggtctttatgacagtggccagacagaagtcaacccaaaagacacctaaaggactcaaacaagattctctggtctgatgaaaccaagattgaactctttggcctgaatgccaagcatcaggtctggaggaaacctggcaccattcctaaggtgaagcatggtggcggcaccatcatgctgtggggatgtttttcagtggcaaggactggaagacttgtcaggatcgagggaaagatgaacagagcaaagtacagagaaatccttgatgaaagcgCTCCGGAGCactaaggacctcagactggggcaaaggttcaccttccaacagacaatgaccctaagcaacgcaggaatggcttcaggacaagtctctgaatggttgggcctctcaaggacagaacctggacttaaacctgatcgaacatctctggagagacctgaaaataactgtgcagcaacgctccccatccaccctgacagagcttgagaggatctgcagagaagaatgggagaaactctccaaatacaggcgtgccaagcttgtagcgtcctaccgtgcttctacacctacattgcttgccgtttgaggttttaggccgagtttctgtacagcactttgacatcagctgatgtatgggctttataaatacatttgattcccAAGAAAGCTCGAGGTTGTAACCGCcgccaaaggggcttcaacaatgtactgaatacttatgtaaatctgatcggttatgttttttttatacattagcaacattttctaaacTTGATTTTGCTTTGTTATTAGGGGGTAGTGTGGAGACCgaagatacatttaaaaaaaaatccattatagaatagggctgtaacgtaacaatctcaaggggtctgaatacttactgaatGTACTGCATGTTGAACACAATGTAAATGGAGGTCTTGTCCAATCTTTGAGGGCACCTGAACATGGTCTGACTGCCAGTAGCTTAAGGTTTTAAAACGTGCACCCATTACATTGTCGTCATTAGGAAAACATGTACTAATTGTAGTTGAAAGTTTCATGAacaaactggtttgaggattaaTGGCCATGCCAAATTGTATCAAAAGCAACCATGCTTGTAATCAGAGCTCAGATTCCCCCTCCATGATACATTGTGTTCCAAGAGGAAGGTGACAAAACATGCATGGTGGACCATTTCGAAAGACAAACATTAAAAAGCTATTAGTTTTTCAGTGGGTGAGACACCCATCTATTCACTTCACCCATAGAAAGTGTTGAATACTAATCCAAATGCATTTCAGACAACCAAAAATGTTACATTTTCACTAATTGAGATGTGTTACCAGAAGTTTATTATTGCTGAAATGTTTCTGCTTTACAGTAAACTTGTGAGGATCAATACTGTCTATCAGGTAACAAAAACTTGATTTAGACTGAACCGTGGTCTGGATGCATAATGAAATGCATAAAAAGGTGGGGTTTATGAGTAGGCCCACTCAACTCACTGATACATTTTAATTCAATATGCCCTTGGCTTCCGAGCGTATCAATTTCTGCCAGTGCATTTCATTCTGCCCACAATGTGCTTCATGAAGCCCAGGAATAGGACCACCAGGAATAGAAGTGTTGATGGGCCAATTAATAAAGGACAACTAGTTCACTGGTTCCTCTCATTTGGAGAGATTATTGAAGAGTAGAGAACAAGAATGAGGACCGATCAATCCCAGGTCACTTCAGAAGACTTAATGCTAGGGTTCCCAAACTTTCTGGCCTGAGACCCAATTTTGATTGTATATTTTTTTTCCTATCTGCAACCccaccatgtaaaaaaaaaagtgtgatgTAATCAAAGGCTAATgttaactttttaaaatgtattttatttactgGGGCTATGACAGTTATTACAAAACCGGTCTGACAGTACTTTTGAAAGTATGGTTTGAAGGGACTGAAATGCATCAGGAAGTTTAGAAGATAAATTAGGCAATCATTTTGTATGATAATCTGTGTTGAAAAGAACATTAATAATGCCCTCCCTCCCAGTCTGACTTCGTGCCTTGTCCACTCTTCTAATGAGTAATGCACGACTTGTGGGCATTGGAGAGGGTAACAGAAGACACATACGTGTTCCCGGGAGTCTTATCCTTCAGTGATGGGGTCATTATTTTGTAGCTTAAATCTTTCAAGAGAGACGCAGATTTGTAAGAAGAAAATAGAACCGCATCTAGCGGTCAGTAAGCTCAGGTTCTACAAGCCAAGCACGATTGTTTTTTATTTCAGAGTCTCTCACACAACCCCTAATTTGGGAAAACACCGGACTTAACGGCATGGCTCAGGAAAAACAAAAAATGGCGAcaaaaattaaaaaaaagggaGGTAATTCcacaatcatttaaaaaaatgacttCCAAAGCCAAATAGTTCCAACTGCATCAAAAAAGTACAAATGCAGTaacaggcagaaaggtcaaacAAAAAGGGCGACAAAATAAAATAACTCAAACATTATTGCAGCATGCTTTGGACAGGAACCCATGCTTGTCATGACGACACAGAAGCCTGTCAGCAGCCAGCCGAGTCCACGAAGTCGAGCAAACAGCCAGGCGTTGCTTCCTCCCCACCCACCATGCCACACAACCAGCACCCagtggtggaggggagagggggttgAGAGGGCACGGGCactgtagtagaccttaccgggGCTTCTGACCCGTGGCCCTGAGATACACGTCATACAGCAGGGCGGGTAGAGTGTGACTCACTGTGGTCCAGTACTGATTGGTAAAGGGGTTGGACCGCAGGTTAACATTGGGGCGCCTGAAAGCCTGCTCTAAGGGGTTGGTCTTGAAGGTCATGTTTATACAGTACTCTGCAGAGAGAATATGACATCACAGGAGGGAGGAGCCCTTTAACAAGGACATTCAATGCCAGGACATGGTCGAGGTAACACCGAGAGGGGTAAGAGTGCAGAACCCAGCCCTAATGGTATATGGGTGGCTTATGCACCCTTACCCCCATGACACTGGACAGAAGCATCACgtcacaggtacagtacacattGGGCTACACTGAGCGAGaacgcgggggggggggggggggtggaggaagaTGGGTGTGACCGAGCGGGGCGTCATTTACCTGGGCTCTCTTCCTGTCATCCTGAGGCAGAGATCATAAAGGAAGGCTGGTGCCTTGTGGCTTACAGCGATCCAGTACTGATTGATAAGGTGATTGGTTGTGAGATTTACATTGGGCCGTCTGAAGGCCTGCTCGAGGGGGTTCCTCTTGAAAGTGGATATTACATGGTACTCTAGGAGAAAAGGTTCAACAGGGTGAATTGTTGGCACAACTCATTTCTCCAAAGTAGAGAGAAAAAGCTAAGCGACAAGCATACAACAAAGCAGCAACAAAGCCAGATCTTCAGTTTAGACAATATATCTTTGAAGTGCTTTTgaaccattattattatttaaccgtACAAGTTATTGCAGGAGTCTGGGAAGATTACGTAACACCACAAATCTAGACTTCAAAGTTAGCCTAATGAATGGAGAAAAGCAATGCTACAAAAAAAACAAGTGATTTCACCTGAAATATTTAAGCAGCACCACAATCAATGGTAAATGAGTAGCAAATATCGACCAAATATATTTGACATTTACTACAACAAACGCACCGGGTTAGCATCTTAAAAGGGAACTATACAAAATGGCACTATGAAAATACCATCCATCTTTAGTGCACTAAACAAATATTGGATTTATGACTGATACACTTTCATTCAAGCATATGAGTCATGTTATTTGTTTCACCAATTTCCTTTAAACCTGGCACAATGTTGATCTTTCTCAGATGGCTAGCATTCAGATGTATTcatttttaaatttaactaggcaggtcagttaagaaaacTCAATGAGGGCTTACCTAGAATATGTACAGTAAACACTAATCCAGGGAGTTTAATACCCCAAAGAGTGTGTGAGTAAACCAAAACCTGCTCACACTCACTACAGTTATAAGAGTGGGTGTGCCCTCAGAAGCAAAACTGATAATCATAATTTATCATTCTGCTTTGTTAGACCATCTGAGAACAAATATCCAAATATACTCCGGGTGTAAGATAAGGAAAGCGGTTCATACCAACTTCACCCCAGTGGAACGGGTTGATGCCACCCGTCGTGCAATTGTACACCAATATGCTCTTAGGCCTGTGGACACAAAAAGGGACAATAGAAACCGGAAGGAATATTTGCATTTCATAATCATATCATTCGTCCAGCTCCAGTGTGCGCGCGCGCAACTGACCTGGTGTGTCTCTGGGAGCCAGAGTACCAGGCGGCAGCCAGTGTGGTATTGATGACCACATCCACAGGCACCAGGTCAGCCACTGCGTTGTTGGATGCTCTCATGGTGCGCAGGATCCCCTTTCCTGCCTATATCGGGCAGAGAAGTGTCCGGTTCATTACTAGGTCATCGGAAAGTGCTTTCTCAGGTTATAATGAGTAGCCACAATGTTGACGTGGTCATGATCGCGGTCCGATCTCTGATCATTTTACATAAGAGAAGAGAACTCGGCacacttttttttctccattacTTACTGCAATGAATATTCCACTAGGTCCATTGAAATTATCAATCCAGCCCTAAGAAGAGTGAAAACATGTTATGACCAGTATACAGAGTTAAATTACTATGGTCAGTTACAGTAGCTACCGTTTAAAAGACAGCCTGCTCAGTACATGAGAACACTCACTGGGAAGGGCTCTTTCCAACTGGCCCCTACTATAGAGGGCCTGATGATGGCCACGTTGAGGTTTCCACACTCCTGCTGGACCAGGTACTCAGCCATGGCCTTGGTGTAGGTGTACGTGTTGGGCCTTTTTCCAATCAGCCCTGGGGTCATTGCTGAGACCAGTTTCTCATCCATCCACCTAACCAATATGAAAACACAATGAAGTCAGGGTTTTTTCTGGATAAAAATTGAGCTTAGATGGTGGGTGTGGCCATGGGAGTGACCAATGGTGCAGTCGCTGAAGAACAATTTTAGAGGCCCTCCCGTTGGCCAGTGGcaaaatgttgccgttttaaagcaatTTCCTGCAGttccacacattttgc

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55261 True 5617 lncRNA 0.44 2 45435672 45451731

Neighbor

gene id symbol gene type direction distance location
LOC110523755 NA coding downstream 21008 45325909 ~ 45414664 (-)
parvaa LOC106573218 coding downstream 114001 45304638 ~ 45321671 (-)
LOC110523724 LOC106573217 coding downstream 135801 45257236 ~ 45299871 (-)
LOC110523718 LOC106573216 coding downstream 179623 45250014 ~ 45256049 (-)
LOC110523666 LOC106573213 coding downstream 293357 45115903 ~ 45142315 (-)
LOC118964648 NA coding upstream 24922 45476653 ~ 45477841 (-)
LOC110523834 LOC106573224 coding upstream 24922 45476653 ~ 45587081 (-)
LOC110523892 LOC106573278 coding upstream 180440 45632171 ~ 45680658 (-)
LOC110523903 LOC106573225 coding upstream 278504 45730235 ~ 45867098 (-)
LOC110523913 LOC106573227 coding upstream 536215 45987946 ~ 46025205 (-)
G49560 NA non-coding downstream 53534 45360643 ~ 45382138 (-)
G49556 NA non-coding downstream 76121 45339225 ~ 45359551 (-)
G49555 NA non-coding downstream 96522 45338855 ~ 45339150 (-)
G49456 NA non-coding downstream 111100 45323205 ~ 45324572 (-)
G49619 NA non-coding upstream 24832 45476563 ~ 45479422 (-)
G49759 NA non-coding upstream 247425 45699156 ~ 45699878 (-)
G49777 NA non-coding upstream 272428 45724159 ~ 45724388 (-)
G49817 NA non-coding upstream 340421 45792152 ~ 45793197 (-)
G49872 NA non-coding upstream 428060 45879791 ~ 45880234 (-)
tspan9a LOC106573177 other downstream 2306643 42852829 ~ 43129052 (-)
G41868 NA other downstream 6413647 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 7243936 38187488 ~ 38191736 (-)
G40732 NA other downstream 7309947 38125280 ~ 38125725 (-)
G40079 NA other downstream 7718639 37716540 ~ 37717033 (-)
G49774 NA other upstream 269074 45720805 ~ 45721124 (-)
G49962 NA other upstream 497227 45948958 ~ 45949951 (-)
G51214 NA other upstream 1613043 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 1837208 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 1925910 47377641 ~ 47378543 (-)

Expression


Co-expression Network