G49456


Basic Information

Item Value
gene id G49456
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45323205 ~ 45324572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55256
aacttagaaatgcctcatgatcTTAGTTTAACTGTCACACTCCataagaacccaaaatataagcttgttttctccaatgtttgtaaacaatgtaaatgtaaactaaCACTGTATAACCTCATAACATGGCTAAAAcaatcatgttgatatcatggatggtcagtccttgcatccatagctctgtctgttattctgagagtggttacatttctccaggcctatcgctcagctttttaccaaaacaaagGCGGGATGGCCGTTTATTTATTGTTTCACTGTGGATTTGCTCTTttaacagctgcatattatcaagatatcaaagtgttgCCAACAAAAAGtgaaacaataggcctatagcaaatgatGCATATGgtattcatttttcacatgtaaatagcacttttcagtaatGCTCAAACCAAGCAATTCCATgagagcagcatttatttttcaactcgaatcagtcctccatgacaacaaaatcataaacagagtagggctggctaataaatcctttgttttggggttatgctcaggtaaaacaatttggcaaatctatacttccatatttccaagtcctattcttgaagatcaaggggtataacatttattggaatgactggaattctgatagactttggtttttaatgtaaagatataattgaattgtattattatatgtagtagaacgTGATGgcttagaagaagcctacataaccaacccataaagtaaaatgtaacatccatatatggccagctatgtaaaatttaacattgatttatcctgcaatagatgtggttcaattggtaacatacatttttgtcttcttctaatgcctcttaaggggaaagtaatctaaaagtaaccgAATGTAATCacattacgttactgagtttgggtaatccaaaacttatgttactgattacaattttggacaggtaactgtaacggattacatttaggaAGTAACCTACCCTGAGtgccgcagcggtctaaggcactatctcagtgctagaggcgtcactacagatcctggttcgatcccgggctgtatcacaaccggccatgatcgggagtGCCATAGGGTGCCGCACAATTGTCTCAGCgttgttaggggagggtttggctggtgtaggccgtcattgtaaataagaatttgttcttaactggcttccctagataaataaaaatgtatttaaaaaaaaccttggcaaagggtggccactttgaagaatctcaaatataaaatatatttagatgtgtttaacactttaattattactacatgattccatgtgtgttatttcatagtgttgatgtcttcactattattctacaatgtagaaaatagcaaaataaagaaaaac
>TU55257
aacttagaaatgcctcatgatcTTAGTTTAACTGTCACACTCCataagaacccaaaatataagcttgttttctccaatgtttgtaaacaatgtaaatgtaaactaaCACTGTATAACCTCATAACATGGCTAAAAcaatcatgttgatatcatggatggtcagtccttgcatccatagctctgtctgttattctgagagtggttacatttctccaggcctatcgctcagctttttaccaaaacaaagGCGGGATGGCCGTTTATTTATTGTTTCACTGTGGATTTGCTCTTttaacagctgcatattatcaagatatcaaagtgttgCCAACAAAAAGtgaaacaataggcctatagcaaatgatGCATATGgtattcatttttcacatgtaaatagcacttttcagtaatGCTCAAACCAAGCAATTCCATgagagcagcatttatttttcaactcgaatcagtcctccatgacaacaaaatcataaacagagtagggctggctaataaatcctttgttttggggttatgctcaggtaaaacaatttggcaaatctatacttccatatttccaagtcctattcttgaagatcaaggggtataacatttattggaatgactggaattctgatagactttggtttttaatgtaaagatataattgaattgtattattatatgtagtagaacgTGATGgcttagaagaagcctacataaccaacccataaagtaaaatgtaacatccatatatggccagctatgtaaaatttaacattgatttatcctgcaatagatgtggttcaattggtaacatacatttttgtcttcttctaatgcctcttaaggggaaagtaatctaaaagtaaccgAATGTAATCacattacgttactgagtttgggtaatccaaaacttatgttactgattacaattttggacaggtaactgtaacggattacatttaggaAGTAACCTACCCTGAGtgccgcagcggtctaaggcactatctcagtgctagaggcgtcactacagatcctggttcgatcccgggctgtatcacaaccggccatgatcgggagtGCCATAGGGTGCCGCACAATTGTCTCAGCgttgttaggggagggtttggctggtgtaggccgtcattgtaaataagaatttgttcttaactggcttccctagataaataaaaatgtatttaaaaaaaaccttggcaaagggtggccactttgaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU55256 False 1368 lncRNA 0.36 1 45323205 45324572
TU55257 True 1233 lncRNA 0.37 1 45323340 45324572

Neighbor

gene id symbol gene type direction distance location
parvaa LOC106573218 coding downstream 1534 45304638 ~ 45321671 (-)
LOC110523724 LOC106573217 coding downstream 23334 45257236 ~ 45299871 (-)
LOC110523718 LOC106573216 coding downstream 67156 45250014 ~ 45256049 (-)
LOC110523666 LOC106573213 coding downstream 180890 45115903 ~ 45142315 (-)
LOC110520774 NA coding downstream 421594 44900676 ~ 44901611 (-)
LOC110523755 NA coding upstream 1337 45325909 ~ 45414664 (-)
LOC118964648 NA coding upstream 152081 45476653 ~ 45477841 (-)
LOC110523834 LOC106573224 coding upstream 152081 45476653 ~ 45587081 (-)
LOC110523892 LOC106573278 coding upstream 307599 45632171 ~ 45680658 (-)
LOC110523903 LOC106573225 coding upstream 405663 45730235 ~ 45867098 (-)
G49524 NA non-coding downstream 79212 45243773 ~ 45243993 (-)
G49510 NA non-coding downstream 102286 45220667 ~ 45220919 (-)
G49489 NA non-coding downstream 124264 45198606 ~ 45198941 (-)
G49555 NA non-coding upstream 14283 45338855 ~ 45339150 (-)
G49556 NA non-coding upstream 14653 45339225 ~ 45359551 (-)
G49560 NA non-coding upstream 36071 45360643 ~ 45382138 (-)
G49459 LOC108441480 non-coding upstream 111100 45435672 ~ 45451731 (-)
G49619 NA non-coding upstream 151991 45476563 ~ 45479422 (-)
tspan9a LOC106573177 other downstream 2194176 42852829 ~ 43129052 (-)
G41868 NA other downstream 6301180 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 7131469 38187488 ~ 38191736 (-)
G40732 NA other downstream 7197480 38125280 ~ 38125725 (-)
G40079 NA other downstream 7606172 37716540 ~ 37717033 (-)
G49774 NA other upstream 396233 45720805 ~ 45721124 (-)
G49962 NA other upstream 624386 45948958 ~ 45949951 (-)
G51214 NA other upstream 1740202 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 1964367 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 2053069 47377641 ~ 47378543 (-)

Expression


Co-expression Network