RNA id: XM_036980054.1


Basic Information

Item Value
RNA id XM_036980054.1
length 4525
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110525010
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53187018 ~ 53233174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGGCAGCGTGACTCACTAGAATAGCGGTTcagttcagacacacacacaccaaccgtAGTCATCTTTCGATCAAGTAGCATAGCCTAAACATAATCTGAAGAGGTAGAATTAATTGTTATAAACCAAAAAGAGACGGGATAACGAGGAAGCTCCCGTTCAATTACGTCAAAGATATTAGACTATTCTGATAACCTGCAGGTAGACTGCTACGCGTGATTGGTGGTAGGGCTACTGTAGGAGACCTTTTGCATTGGCGGCGCAGCGGGTTGTACGGATTGGCTGAGCGATGCAAGGTAGAATTGGGCGACACTCAGGAAGAAACTCTCTGTGATATCAGTCCGACTTCAGTCGGCACTAGACGGGGGGACCGTATTTCCTCACTGAGTCAGCACAAGGAGGTGAAAAACGGTGTCTCTAATCTAATCACTTCGGTCTTCCCTGGCGGCGACATGGCGAGGGAGAACGGAGAGTCGGGCGGGGATGGATCTTGGAAGAAGAATGTCGACGATATCAAGCATGTATTCGAGTTCAAAGAAGTCCTTGGAACGATAAAACATGAGAACATTGTGGCTTTGGAGGACATCTATGAGAGCTCCAACCACCTATACCTCATCATGCAGTTggtGTCTGGTGGTGAGTTGTTTGACCGCATCGTAGAGAAGGGTTTCTACACAGAGATGGACGCCAGCAGACTCATTAAACAGGTGCTTGACGCTGTCAACTACCTCCACGACATGGGCATCGTACACAGAGACCTCAAGCCAGAGAACCTGCTTTACTACAACCCCCATGACGAGGCCAAGATCATGATCAGTGACTTTGGTCTGTCTAAgatggaggggacaggagacgtGATGGCCACTGCCTGTGGGACGCCAGGATATGTGGCCCCAGAGGTTCTGGCTCAGAAGCCCTACAGCAAGGCAGTGGACTGCTGGTCTATCGGAGTCATCGCCTACATTCTGTTGTGTGGTTACCCTCCATTCTATGACGAGAATGACTCTAAGTTGTTTGAGCAGATACTCAAGGCAGACTATGAGTTTGATGCACCCTATTGGGATGATATATCGGATTCAGCCAAAGAGTTCATCAGCTCTCTGATGGAGAAGGATCCACAGAAGAGATTCACCTGTGACCAGGCTCTAGCCCACCCCTGGATTGCTGGGGACACGGCTCTCTGCAAGAACATCCATGAATCAGTCAGTCGGCAGATGAGGAAAAATTTTGCCAAAAGCAAATGGAGGCAAGCGTTTAACGCCACGGCAGTGATTCGTCATATGAGGCGCTTGCAGCTGGGCAGTAGTCTGAACAGCAGCTTTGGCAGCAGTATGAGCTTTGACCAACAGGGACCGAACTCTATGCTGGCCAAGAGCATGTCTGTAGACTGTGCCACCCTCTCACGCAAAGATGGTCCTCCAAAACCTCTGcccactctgcctctctccactGCAGCCTGCAGTGCCCCTGCCAGCATCAGAGGGGAACCACAGGCAGAACCACAGGTTGTGGCTACAGCTGCAGTGGTGGAGCCACCCCGGCCACGCCCCTCCACAGTCACCACCATCCACATGGGGACTAAATGACGTCAGGTTCCGCGGGAGGTCAGTTGGGAGACCACAGAGCTTTGAGTTGGTTTTCTTAATTCAACCCCTCAGAATTCCAGAATTTCTCTCCTAGTCTGCCCATCCCGCCCATTATCAGCTGTTGGGATTGAGAACTTGAGGACCATGGCTCAGCACTTACTGCGTTCTCAGGGCAGCACTCTGTCTGTACCCAACCACAGTAAGTGTATTCAGAGATGTGAAATAAAATGAAGAGAGCTCACAGGATTTCCTATTTCCTAtcaaacagacaatcatatctGTTCTACATGATACATGCCTATTTGAACATTCTACTTCCTAACAGACCACAGGTCTGGTGGTGAAGAGATGAGGAagaccactgtctctctctctctctctctctctctctctctgtctactgaCCAGAGGGTTTAGTTTCCCAGTGTTTAAATTGGGTTGGTGGACTCGGTACGGAGTAATTGCAACACAAAATGTTCACCTCTTATAGAATGTTCACTCTAAAATATGAACACGGACATTGAAAATATTGTACTGTAAAATGAAAATGGCTCCTGAAATGAATACCGGCATCTTTGTCATTCCACTTCGAGCACTGCCGTGTTGTACGACTGTCCTCCAGAAGACAAGAAGACCTGTTTTGTATGGGACATTGGTGGTGTTATGAGGCCACACTATGCTAGGTTGAAGATGGAGAAGGTTAAGACAACGTAATAATTCCGTGCAAGATGCGTTCGAATATAAACAAATTCATTGGACCAGCGCTGGAGCGAAAATGACTGGAAGTGAATGTTAGCAGTACAGAAAGTTTGCCATCAAAGTGGAAAATAAACACAATCGTAGAGAATATCTGTTAACTACTCAGCCAACAAATAACTTAACTGTTTTACTGTCATTCTATtcgtttaaatgttttttttcttccaaatgAGCTACAGACACTTTACTACTTGATTTCCCAACTGCTGGTCACGTTTTCAATGCTTATCTCCTGTAAAATCAGAAACAGCGCTGGTCCAATGAATGTGTTTCTTTTCAAATGCTGCCGCATGGAATTATTCCGTTTTCTTCTCCTTATGGGAACTCACCATGTTTTTATTAGTCTTTGTTATTGAGACTGCTGTAATTCTGAGACTGTGAGTGTCAGGGGCATCACGCCCTCTATGCCTTGTGTTCAAAATTGCACCCTGAAACCATTGTGAGGAGTTACTTTTATGAAACTGAAACAGCATTCAAGACTAAAATAGTGATGACTTCTTATCCTAATTTCTAGTTTTCATTTTTAGCTGCAGTTAAGGTTGAGTAAAATCACTGGTTCATTATTCCCAACTGTAGGGCATAgcggttatatatatatatttgctttATGTTTTCTGGATATATAATGTCAGAGAAACACATCTATCTGCAGAATCATGCACACACCTGTGAATGAAGTGCTTTACTAGTGTGAGACAACTGGCAAGAGCAGTTTTGACGGCCGGTTGTGACGGTAATGACGGCCGGTTGTGACGGTAATGACGGTAATGACGGTAATGACGGTAATGACGGTTGTGACAGTTATGCATTCATCGTACACTTTTCCTGATTGAAAGgtattgaattatttattttcttattCTGACTCTTGTAAGAACTTTACTTACAGGGGAAAAAAATTGTAAATGTGTCACAATATGTCAGATATGTTGTCAGTAGTAGGTTCAAATGTATAGTTGTTACTTGTGAATAATTGCGATGTAACTGTGACGCCATCCTTAGCATAAGGATAGCATAGCTTTGTGACCTGTTCTCAGGGAGATACTTTGACAATTTGATGAAATGAAATCCCAGTTCTGATGCTGAGGTTGACGTTTATGATGATGATGCATGATATTAACTAAAGCAAGCTTTGCATATTCTTACGTGTCCCGTCAGGACAGTTCAGctcataattttaaaaaaaaattggtggGGATGAACCTTACGTGGAATGGACAGTTTGATATATCCCATTTTGGGGGCATTGTTTAAAAATCAAACAAATGGGATGAGACTGAAATGATGCGTATTATAACAATGACCACTGCAATAGAGTTCAATTTAAACACATATGACAAACTAAGAAATAAAGATTGAAGTCATTTGATAGTCAGTGCGCCATTGCAGAATAATTTTGTAGTAGCTTGTGTAGTATAGCCAACTTTAGTTACCTTTTGCTGCTTTGCTTCTTCCCCCCCAGGCGCTGGCTGTTCCCAGAAGTGCTCACACACTGTTTGGTCAGTGTACTTTCATACCCGTCCTTTGAATTTAGCAGCCAgttgctgtctctctcactgtcctcaCTCTCTGTCTTCGCTCCTCTCTCCCAAAACGAACGGTCTTCACGCTGCAAGGAGGAGGGACATCTGTCTAGCAAGCGTTTTTACCTGTGATATACCACTGCTTAATATTTCACTGTTCGACATGGATGGAACCAGGGTtgatttcatttcattcagtttactttctgaattgactttATTTCAAATGGTATTGACCCCCAACCCTGGATGCAACTTAAAAGCTTGAAATTAGTATGTTTCGATGTTGAGCACAATTGTAGATCTCAATGTGCAATGTTGATGTAAAAGGACTTGAAAAACTACTTCTCAGGGGCAGTAAACTATGAGTATAGATATATGTTCATGAAGATGTAGATCCTCTTGTCCTTTTGTAGATATACATCTCAGTAACCATATTTGCTTGGATTGCGGTGTTTATTGATTTTCTACGTTACAAATACTGTATGTTCTCTTCAAAAACAGCATGATACAAAGCATGAAATATAAAGCTTTTACAAAGCATGCATGAAAAGCACTTTGTTTGAGAGATACTGTGTATATAGGTTGTGATAAAGTGGACTACAAGATGACTAAGTCTTGAATACAATCAAATAAAAAGTAAGAACATACTTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64695 lncRNA upstream 155065 53031123 ~ 53031953 (+) True G58192
TU64734 lncRNA upstream 189588 52997224 ~ 52997430 (+) True G58230
TU64733 lncRNA upstream 190176 52996626 ~ 52996842 (+) True G58229
TU64688 lncRNA upstream 198469 52965815 ~ 52988549 (+) True LOC118964862
TU64708 lncRNA upstream 243761 52942885 ~ 52943257 (+) True G58205
TU64690 lncRNA downstream 361 53233535 ~ 53314985 (+) True G58187
TU64684 lncRNA downstream 101567 53334741 ~ 53337311 (+) True G58181
TU64906 lncRNA downstream 192366 53425540 ~ 53425822 (+) True G58369
TU64908 lncRNA downstream 193453 53426627 ~ 53426922 (+) True G58371
TU64909 lncRNA downstream 193790 53426964 ~ 53427210 (+) True G58372
XR_002473689.2 mRNA upstream 5258 53159233 ~ 53181760 (+) False LOC110524999
XM_021604968.2 mRNA upstream 8788 53159234 ~ 53178230 (+) True LOC110524999
XR_005052084.1 mRNA upstream 37329 53080973 ~ 53149689 (+) False LOC110524948
XM_036980058.1 mRNA downstream 17435 53250609 ~ 53296485 (+) False LOC110525022
XM_036980062.1 mRNA downstream 17438 53250612 ~ 53296485 (+) True LOC110525022
LOC110532423 mRNA downstream 122577 53355751 ~ 53373462 (+) True LOC110532423
XM_021605046.2 mRNA downstream 165876 53399050 ~ 53422754 (+) False LOC110525096
XM_021605066.2 mRNA downstream 165876 53399050 ~ 53422754 (+) False LOC110525096
TU62774 other upstream 1736083 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3103022 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4293106 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 4803761 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 5162060 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 433041 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 754966 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 811675 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 1488014 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2672334 55905508 ~ 55923376 (+) True G61202

Expression Profile