RNA id: XM_021605103.2


Basic Information

Item Value
RNA id XM_021605103.2
length 4291
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110525151
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53437534 ~ 53485553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAACTCATCACCCTCGTGTTCCGCAGACCTTAAAGTGGGCGGTGTCGGAGTGCACGTTGTTTTCTTGTATTTTAGGTCTTGGAAAGGAGAAACGAGAGTGGTCAGATCAATGTGTGAAGGGTTGGTCGACATGGTGGGAGAGTACAGATGATGAAACATTGAGAACGGAACTCTAGACCGATCATAGTTCCTAAAACGGACCGCGAGACGAACACGGTGATTATGCCCAGCGCAGCAGTGAGACGTTTATCACAAGTCGAAAAATACCTCAACAGCCGGAACGATATGGCGGAACGGAGCAGTGGCGAAGGGAACTCCCGGAACATTCCGGAGTCGATGCATCACGGCAGCTTGGAGAACAACCTCGATCTGGACCTGAGCGGCATCCCAGACTCCCAACGCTACCTCGACTCCTCCCACCGCAGCCTAGACTCCTCCTACCGCTCCCTGCCCCCCGGACTCAACAGCTTGCAGCAGAAGATCCTCAGGGTGACAGAGCAACTGAAGATTGAGACGGAGTCACGAGACGACAATGTGATAGAGTACCTGAAACTGGTGAACAGTGTCGACAAGCAGCAGGTGTTTACCTTTTTAACGGTGGGGCGCATCAAGCATGTGTTTGAGAAGAAGAACCAGAAGTCAGCTCACAGCATTGCCCACATGCAGAAAAAGCTTGAGCAGTATCATAAGAAGATGAAGGACAGCAGCGAGAAGGACACCAGCTCCCAACACCACAGCATCTCTAAAGAGAGCTCAAAGGACATGCTAAGCCACACCATGAGCAACGTGAGCAGTGGTAGTGGACGACACCCACTGGACAAGATCAAGACAGTAGGGCCTGGCGTCTCGCTCTCGCCACCTTTCTTTTTCAGCAAGCCCCGGGACTTTGCCAACCTCATCAGGAACAAGTTTGGCAGTGCCGACAACATCGCTCACCTGAAGACCTACCTCGACACGCCCTCTCCCTTCCACTCTGAAGGAACTGGGCGGGCCTTGAGTGGGAGCGCCACCTTAGTGAGTGGGAAGACCCCTGCCGCCACGCCCACGCCCAAGTACACAAGCGATGACGAGTGTTCCTCGGGCACGTCCCTGTCGGCGGACAGCAACGGGAACACAATGGCTCTGGGCGTTGGCCTGGGTCTAGAAGTGGGTGTCGGGGCAGTGATGACACCAGGGCAGATCCTGGAgtctggggacagccaggagagGCTGGGCCTGACCACGGAGGAGGTTAGGGAGATCAGGGAGGCCCAGGGGCAGCTGGAGGAGGACATGGAGGGATTCAAGACCCAGTTCAAGAAAGACCACAGCTTCATCACCCAAACGCTGCAAGAGGAGAGATACAGGTGTGAGCGGTTGGAGGACCAGCTGAATGATCTGACTGAGCTCCACCAGGCCGAGACAGCCGACCTGAAACAGGAGCTGGCCAGCATTGAGGAGAGAGTGGCCTACCAAGCCTACGAGAGGGCTAGAGACATAcaggAGGCCCTAGAGTCATGCCAGACGCGGGTCTCTAAACTAGagctccagcagcagcagcaacaaacCGTACAGCTTGAGTCCCGTGATGCCAGGGTGCTTCTGGGTAAAAGTATCAACATCATGCTCGCCATCGTCACCGTGATCCTTGTATGCGTCTCCACGGCCGCCAAGTTCGCGGCACCCCTACTGCGGAGCCGTCGCCACGTGATGGGCACCTTCCTGGGCATGTGTTTGTTGGCGCTGTTCTGGAGGAACTGGGAGAATCTACAGTGTGCTGTGGAGAGGGTCCTGGTGCCAGCCTGAGGGGGGACAATAGTCTAATGCTGTCCATGTCACTCACTGCAACAAATGATCTACGGACTGATCTCAGAACTCCAACAAAACAGCCTATTGATGTAGTAAAATGCAGAAGGTGCATAATGCAAAAGAAGTCCGCTGGGGGGAAATGGAGCTAGCAAAGCATGGTCACTGACTGGTTAATCGCATCACCTAGAATAACACTGAATATCAAGACATTGTGGGGTGAATGAACACACAATAACTGACATAACAACAGAAACGACAACCACACCACTTGAGAATGTTGTAATCCTTGATCAATGCTGTTTCTTGCAATTGTAAGGTTTAATCAATGCTCCCAGAAACAAGTCTTGCCGTGTTAAGTCCATCATGAGAGACTTCAACATATAGGTTCTCCATTGGTCAGAAGAGGGGATGCTGTCCAGAACACACTACAACAAATAATTTCCAGACAGTCAGATCACGTGCATAGTGCAGAAGAATTGCGATAGAGCAAGCATGATTGGGGAAAGATAGGAGCTGGGTAAAGCATGgttactaactgactgactgttcattatacagtatattgctGGATCACAATCTCCAACGCCAtcaatacacacacgcacacacacaactcagCCTTGATGGGCGGCCCTGCCAACATTTTACCACAGAGACTACAGTCCACAATACAGGAGTCAGGGAGGTGGACATCTTGTTTAGATCTTGTATGTCTTAAGGCTTATGTCTTACAGCCAATCTTCATTCCTTCTTTATTACCTTGCCTGCAGTCAGAGGTTTGTCAGCATTCTTTTACAACTGCTGTTGACTTGGTTAGTTTACTTCTTTTATTGGatacattttaaaagtgaaaTATGTTTGATTGCTTCTTTTTTTTAACAGCCACTTGTTTGTTTTTAGgaaaggatgttctctgtttccCTCTAGATGGAGAAATGACGGGATGCTGTCTGAAGGTTTGggggatgtaaaaaaaaagaatccgattttttttcttctccatatAGAAACGTATACATACGAACAACAAATGACAGACACAGCCAAACAATGACTACATCTCATCTGCCCAGAAACagcatgctcacacccccatccctagtgcctgcattattGTTTGCCACTTAAATTGTATCAATTTGTTTTTCTCAGTCGCCCCTACTATTTCCATATTTAAATAATACCGAATGCCAATAGTTATAATTAATAGATAGAGAAAGTATTtctcagagaggaggagggactgaTAAGGTTGATTTGGCCAATTGATTGATGTTTGTTGACCTTCAAGAGGAAGTAGTGGACTCTTTGTAACACTGTCATATGAGGCTTTGGGTTCTTTTACTGTTCCTCTGAAACACTTTTTCTGTTCCAATGGGTGataggctagctagctactctagtCCAATGAGAAGCAACTGAGCATTGAGCAGCCTTACATATACTCCACAGTGGATAGAGATAAGCACTAAAAGGAGTATATTTGGGGGTCTGGGGGGTCGACTAGCACAAGGACTAGTATCTGTATGTGGACTTAACATGACAGATACAGACCATATCTAATGTTTGTTTGTTGTAATAACATTTCCTCtaatttgtttgtttgtattgACCTAGTCACGCACAGACAGGGTTGTTGTTATTTACCTGCTGctgactgtatgtacagtatgagaTTTGGGTAATACTTTATTTTACAGCACAGTTTAAGATGGTTCTAGTGTTGCAATACTCgggtaactttcccaaaatgtcCATGTTTTCCATAAATCCTGTTTTATTAGGATTCCCAATTCTCTGCTTATTCCCATTTTtattccaggaatcttccaactgtgaatttggggaaagttaccgGAATTTTAGCAATTATTACGTAATTACCGTTTTAACATTTTAATTTCTAACTATAGTACCTGCTAAacagggggtacagagatgaTTTATGTTCCTCTGTTTTGATACACCGGAAGAATTTACCTGAACATGGATTAGATTTATTACAGTCTCTTATTCATCTACAGTGAACATGGATTAGATTCATTACAGTCTCTTATTCATCTACAGTGAACATGGATTTGATTCATTACAGACTCTTATTCATCTTCAGTGAACATGGATTTGATTCATTACAGACTCTTATTCATCTTCAGTGAACATGGATTAGATTCATTACAGTCTCTTATTCATCTTCAGTGAACATGGATTAGATTCATTACAGTCTCTTATTCATCTTCACTGCACAATAATATGATTTACCTGCTCTCATACATTATGTGCCTTCTTGTATGCGACAATTCTGttaaaattaaacaaaaaaaatgtagtcAACAAACCACTCCATGATATTTGAGTGAGTGGGATATTTTGTGCTTGCCTGTCAGATATTTgcctatgattaaaaaaaaaaatttaagtcAGGAATACCACCTTAGTGGTATGGATGACAGTAACGGTCAAAATAATGAATAAACTAATGAAATAAAGTAATTATTAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64909 lncRNA upstream 10324 53426964 ~ 53427210 (+) True G58372
TU64908 lncRNA upstream 10612 53426627 ~ 53426922 (+) True G58371
TU64906 lncRNA upstream 11712 53425540 ~ 53425822 (+) True G58369
TU64684 lncRNA upstream 100223 53334741 ~ 53337311 (+) True G58181
TU64690 lncRNA upstream 122549 53233535 ~ 53314985 (+) True G58187
TU65413 lncRNA downstream 101409 53586962 ~ 53587198 (+) True G58840
TU65416 lncRNA downstream 104360 53589913 ~ 53590161 (+) True G58843
TU65418 lncRNA downstream 105328 53590881 ~ 53591113 (+) True G58845
TU65422 lncRNA downstream 111480 53597033 ~ 53597391 (+) True G58849
TU65428 lncRNA downstream 112648 53598201 ~ 53634505 (+) True G58855
XM_021605046.2 mRNA upstream 14780 53399050 ~ 53422754 (+) False LOC110525096
XM_021605066.2 mRNA upstream 14780 53399050 ~ 53422754 (+) False LOC110525096
XM_021605071.2 mRNA upstream 14780 53399051 ~ 53422754 (+) False LOC110525096
XM_021605082.2 mRNA upstream 14780 53399052 ~ 53422754 (+) False LOC110525096
XM_021605053.2 mRNA upstream 14780 53399584 ~ 53422754 (+) False LOC110525096
XM_021605122.2 mRNA downstream 6293 53491846 ~ 53557609 (+) False LOC110525170
XM_036980134.1 mRNA downstream 6293 53491846 ~ 53557609 (+) False LOC110525170
XM_036980137.1 mRNA downstream 6294 53491847 ~ 53557609 (+) False LOC110525170
XR_005052111.1 mRNA downstream 6295 53491848 ~ 53557609 (+) False LOC110525170
XM_036980145.1 mRNA downstream 14160 53499713 ~ 53557609 (+) False LOC110525170
TU62774 other upstream 1986599 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3353538 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4543622 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5054277 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 5412576 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 180662 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 502587 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 559296 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 1235635 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2419955 55905508 ~ 55923376 (+) True G61202

Expression Profile