RNA id: XM_036980164.1


Basic Information

Item Value
RNA id XM_036980164.1
length 6971
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110516195
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53598194 ~ 53620959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGGGTACTGTTTCCACCACTGCACTGGTTCTGTGTATAAACCATTTAGTAATAACTTTTACCCAAAGCGATTTAGCTACGATCATGCTTGCGCTTTCCCGCAAAGTATTGTTCCTAGAGATACGGAATATGCCGCTGTTAAGTGGAAACGTTATTTTCATTTGAGTTGGTTGATCAAGGACCGAAGACTCCGTACGGAAGCTTCTGCAACGAGTCGTCTGTATCAACAGTAGCTCGTTGTGGGACGAAGCAATGGCCATGCACATacacattttacgtatgggtgctCCCGGGAATCGAATTCATAATTCttgcgttgcaagcgccatgctgtaccaactgagctacaggaccacAGACAACAATAGCCAACGAGTTTAAATGAGGATGATCCACATGATCATCAAAGTTTGGAAGGTCAAGTCCAGAAAATGAAGAATGATATCCTGGGTTTAAACTATCCAGAAGATAGTGAAGTGAAGGATCCCCTGCCTCAGATCGAGCTGAAGGCTGTGACAAGGAGAAAAGTTAAGACCAAGAGGAAGACCAGTGCCAACAGGCCCACAGTTGAACAGAGCACTGATACTGATGCAGCTGAGATAGATTTTGTTGATAATCAGAatgatgaagatgaggatgaGGTGAAGAAGGatcccctgcctcagatggaGCCGGATGCCGTGAAGAGAAATAAAGTCAAGACCAAGAGGACCAAGAGAAACAAAGTGGAGCAGATCACTGATACAGATGCAGGTCCCTCTACATCTGTGGAATTCTCTGGGATGACAGTTCAGGGGACATCTCACCAGGGACAATCTAATGAGTGTGTCTCCAGGGCCTGTCAGACCAGGGCTCTTGACCTCCCGCCAATCAATCCGGATGCTTTCAACCCGATTATCATCCGGTTTCTGGAAAAACTTACTGAGGAGCAATGGAGGCAGTTAAGCATTGGCAGGATGGACCCTGTGATGAGGGCATTGCTTGCAGAGATGTGCCTGGAGATTGTGCGGTTTGTATCTGAGGCCATCCTGGAGGTCATCATCCCTGCAATTTTCCGTTTTGTACGGATATACAGCCATGTGTCTCCAGTATCCGGCAAGTCTCTGACAGAATCAGAGAGATCCTCTAGCACAAACCTGAAGGTTCGCAAGAGAGGCAGCAGCAAATCCTCAAGGTCTTGCACGGCCAAATCAAGCTCCTCTCGTAATGGGTCTCAGACATTGTTGCCAAATactcagggagatggtgagtctatTTCATCTGAGCCACTCAGTGACTTTTTTGGGATCACTGAGGACAGTCTCCTCACTGGTGTCCAGGATTCCTTCAAAGAGTCGCTGAACAATGTCCTCTGTATCCAAAGAGAGGGCCAGGTAGACACTCAAAGTCTATCCCGGGTTATTGTTGGAGAAGTGTCAAAGAAAGTCAATTCCATCATCTCTGTGGCCATCCAAACTCCCATCTCTGGGCGAATGTCCCCTGTCATTTTTGCCAGTGGTGGTGTCTCCAGCACCAAGGTGGTTGAGGAGATGGTGTCTGGCATTTCCAACATACTTCAGATGTACATTAATGGGAAGAGTGTTGAGCAGAGTGTTGTTCTCAGAGAGGATGGTGTTGAGGTGGATATGACACATTTAACAGGACAGGTCATGACAGCCCTCAGTGGCACTGTTTTGAACTTCAGCAATAAGGAGGAAAATGAACCCGACAAGAGGGAACTGCTTTGTGTTGTTGCTGACCATATGAAGAGGCTTGAAGCTTGTAAAAGTCCTGAGGAGATGCTAAAACAAGGAGAGAGCAACCTCAATATCAAAGGTACCAAATCTAGTCTTCGTCTGTCAACACAAAGTATGGACAGACTACTCACCGAGGAGTTTCAGACCAAGGCCACTGAATCGATCCGGGAGATCGTTAAAAGATTCAGGGGTTGTGCATCATGTTGTTCTGGCACTACATTATCTAGTCCAACTCCTAGGATAGGTGAGATCAGAGACCTTATGATTGACCCTGAGGCTTCTGAGTTGGTAAGTACCTTTGTTTCAGACATGGACAATCTTACCCAGTCTATCAGGGCATCCTGCTCCCCTGCACAGAGTGAGCAGATCCTTCTTGAAAACCATCAAAGTAAGATCTGGTCTTACACTGTTGGTTGTTACTACGACATGAAAAATACGCTGAAGAGGCTCCTTACCTGTCCAGAAAAAGGGGATCTCGCAAGTACATTTGTGGAGAGCACAAAAGATTCTTTCACAATGGTTCCAACTTTGTGCCTGGACATCGGTCATTCCAGTAATGGTGAGGCTGACACATCGGACTCCATTTCTTGTAAACCACTTTTAATAACCTCCTCATCTATGAATGAACAAAAAGGACAAAGTGAGACCCCAAAACCTCTCTTGGCTCTCAAAAAGTATTTGCAAGACCAAGTTCTCCTTGACACCGCAAAAGCGATTGCCAGCCAGGTTCTAGTCTTGTATAAGACTGAGGTGATGGAGAAGTTCTCATCTTCTGTTGGAGAGTGTGATTCTGAAGAGTCTCTGGAGGCCATTCTATTTGTGGATGGCATCATGTCTGACTTGAATGATTTCACCAGTTCTTGTTCCGCCTCACCATCTGAGTTGTTAGACAGTGAACAATGTCTCTCCCATCTCACTTTTCCACTTGGTCTGCAGGACAGCACCACCAACAGTGAATCTACCCAGAGTCTTCCAGTTATAAATATGAAGAAACTCTCCAGTGTGTCTTTCCAGACAAAGGCTAGAAAGGCAGTGAGTGAAGCTCTGAGATCTGTCAACCCCTTTACAAACAGCTTACTGGGAGACTCGGAAGCATCTAAATTGCTGGACACTTTTGTAACAGATGTGGAGACTATTGTTCAGTCCATGCAGGCACATGACTCTGAAAATTTCAAAATGTCAAAAGTGAGCACCCTTTCTGCTGCTCGTATTATATATCATAGATTTCGAGAAATGCTGAGGTGGTTTCTCACTCCCTGCCAAGACTCTGTAAAGGTCATCGATGGTGTTACACCAATACATAATGAGACTCTCAAACAGGCTCCTAGTGAAAGTTTAGATTCTCAGGTGACTTGTAGTAGTGATTCTCTTGAAATCCAAGCAGACCTTCAAACCTGTACCAAGGAGGTCATTAGTCAGATCCTCACTGTGTATCACTCCGAGGAATCCATGGAGGAATGCATATCTAGCCTAAAAGGAGATACAGAAGACCTGTCCAAGCTTTTGGATGCCGTTGTTTCTCAGATTGACGTCCTTGCCGCCTCCAAATCATATTTATTTGTTTATGACTATGCTGTCAATACACAGGACAATTTGCATGGTGAGATCAACAATATTGAGGAGGAGGCATCCTCTAGAAGTCTTAAATCCACAGCCTTTGACAAACTATGTACTGAGGAGTTTCAAACTAAAGCCTCACATATGGCTGGTGGGATCCTTCAATCAGGGTTAATTGGCATTGTAAATACCAACCTTGATGGTAGAAGTGCAGACATTTGTGCAGAGTCCAGTAATGAAAGTGATGTCAAAATCCTTCAGAAGAGTGGAACTCCATCTTTGTTCACCTCTTCTCTGCACACCAATTCTGCAGCATCCAACATTGTCATAAGCATCACTAAAGACCTTAATAGCTTCACCCAGATGACTAAAATGTCTGATGCTTCAGTGTCTGGCCAGTTAGAGAGATCCCTGTCAGCTTCAACCCTTCCTGTCAGTGTTCACAACGGGGCCAATGTGAAAGGAAAGATCATTTGGCCAGGCACTGTTAACCTGTTCAACAATGTGTTCACCAAGGTCAAGGATTTTTTTGCCCAGCAACAACCGGTCCTCCTAGACAATGTGGTTGAGGCCCCCAAACATGCCGAATCCATATGCAGAACAGCTACTTCTACACAAATGACTTACAGTGAACATGAAGGCAGCCAGATCAGCATGGTAAATTATTCCAAAACCTTAATTAGTCAGACTCTGATGACAATCCAGAGGAGAGTGTCTATGTCAGAGAGGATGAGCACCTCAGAGAAAGGCCTCTTGACTCGTTCCATCGTGGGCTCCATGTTGGAGTATGTTGACATGGTGAGAACTGATGGAAATGAGATACACCGGCCATCCTCCTCAAAGTCCTCCCTGTCCATCACCTCTGCCATGACCAGAGGGTCCCAGAGTGATTTTACAAATTCTCTTCCAGGCACTCCAGTCCCCAATGAGTGGCCTGTTGAAATCTATTGTCCTATCATTAGGAGTTCGGTCATTGATATGAGTGACTCCTCAACTCATTCACAAGGGTCAACAAATTACACAAGGCAAACCATTTCTGCCATAGTTGACACTGTTATGGAGGTCATTCCAAGAAAAGATACGGAACACATAGCAACTGCAGATGATGTCACTTCTTTTACAAGAAGACTTGCGAGACTCAGCCCCAGGGACGGTCTTCAGAACTTCTCACATGAGCTCACTGACAAAGTTTATGAGCTCATAAAAAGTCACAACACCCCCCAGGCTCTTTTTGTGCCAGCTGGCAAGAGCGTGTCTGACTCTATTCTTTTGAAGCTGAAGACAGGATTGAATGCTTCTGAAGAATCCAGGGAGTTTCCATCTGACCTTGTGTACTCCTTTGCTACGGAGTCAATAAAACGTCTGCTACAGCAGATTGTCTTCTGGCTTCCTCCACCATCACAAGGATCCGATTTCTGCCAAACTGTCATCTCTGATGGTTCTCTGCAGGACACAAGTCAGCTTATCCCGAGCTCTTCTGCCATCTCCATTAGTTCCTCACAGGTTTACTGTGACACAAAGAGCCTTTTCACCAATATAATGGTCAATCAGGTCATGGATACCTGTTCTGTGGCCTCCAGTTCATCAGAAGAATTATCAGAGTTGATGAACATAATCAATGGGTTGTCCCCAACTGATGCTGGAACACTTGACTCTGACAGACCGGCTCTCATGACCACTAGCCGTCAGTCTAGTGCCAAATCATTGCCTAGAACCTCTCTGTCTGGCAGCAGCAGCACACACAACGGTGGAACTGTGGATATTCAAGTTTTAGGAGAGGTGGAATCCAAGATGGACAACAAAGATCTGGAGATGTGTAGTGTCTCTGTGTATCCATCAACTCCATCAGCCATGGACTCTGATACACATGCATCATTTGACTCCACTAGCAATGACTACACCTCTTTGGTACTTTTACTGATTGTTAGATTGCTGTCAATGATCACCCCTATCACATTACTGGAATCCTCTGACATTGGTGAAACATCAAGAGTTCTCACAAAGAGGATTCTGTCTGAGTTCTGTGGCACCTCAGGCCTTGAACCAACTCAAGCCTACCCCCAGAATCTGAAAATCAAAAAGATTTTCAAGGCTGTCTACAAGGGGCTTCTTCAAGAATTTGGGTCAGAGAAGATGCTCCAGGTTGCAATGAAGTCAACGGATTATGCATTTGACGATGCCCTGGTCAAATCATTAACTAGGGAACTACTAACTAAATGCAATGAGGCTAGCTCTTCACCTCCCTCCATGACCCAGTTGTCATCACACAATGCACTTGGCAGTGACGAGGTAGGTAATTCTGGGCTTCCAACAACTGGTAGAAaggaaaagaagagaggaagattcagcTCTCTCTGTGGACTCAACCCAAAGTGTACAAAGAAGGTCAACAAGAAGAACCACTGCATTCCAACACCTTCCCAGAACCAGACCCCTGCCGTCAGTGAAACAGCCGTGAGGATGCGGACGATGTCCTGTAGCTGGCTCATTGATGGTTCACTTCTCAGCTTCTTTGGAagttgctccttggttggggtatTCAGGTATGAATCGCATTCACCCCCCTTTTTTACACTGCAAGCATATGAGTGAGTTTCAACAATGCCTCTTTTCTCCTTGGAAGTTTcaacatccattatctcagcaacAGTTTGGTCATGTCCTGATTACATGCTTCGAGCTATGAAGACGTTAGCAGGCTAACttaactacacacgctgaaactTTTCGATAGCTAGCTTGTTCGTTGGAACTCGTCAAAAATATTTGTCAATGGTTTGATAAATTACAAAATTATTAATTGTATGGTTAGATATCATTTTTTTGTGAAAACGAAAAACAAATTGCAACTGCAGTCTAAAACTCTAAACTTTATCAGAAAACCCCAAAATTGTTCCTCAGCTAGAAATGTTCCACCTTCTCATGTCGCCATCTTGACAATGTCACTGATTTCATGGAGCTCTCCTGCGCATCATTTACTTCACAAAATCCCGCAAATTTGAAAGCGGAAGAAATAAACATTGTGAGATTGTAAATATGTGTGAGAGTCAGAGATTTGAAAGCAGACGCTTTCATCCAAAGCGATGTACAGTAATGCGTACATACATTTTACTTTTGGGTGGCCCAGGGAAATTAGACTTTTTTTCAAGCTTTTCTAAGCAATTTTTGTATCTCTTTCtttgtaatactgtatgtattcaatCATTTCGAATTGgtcacttcccactgggcacatacaTCAATTCAATGtttattccacattggttcaacgtaatttaattgaaattacaTGGATATTGTGTCACAGTGAATTTTTAAATCTGCAGTCAATTTAATTATGTTTTCATGTGCCAtgaatctgacatttcacatatgATCCTCATAGGATTAGGCTACATAATTACAGTGGTgcagtaaatgtaatgtcaatTCAATACGATggtgcatatactgtacatatagccaTTATAGCTATTAAACCCATGTTCAGTGACTGTAATCTGTGACCCAAGTAGCCTAATATGTTTGTGACGTTCCATGGAACCCACGGTATTGTTTAAAACTAGATTCGGATTGGCTTGCAGGTCATTCTACAGTGTAAATTATAAatgaaaacgtgtttttataTCAGTGTTACAGATTCACAATACCGAGCATGTCTCAACCCGTACCGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65422 lncRNA upstream 803 53597033 ~ 53597391 (+) True G58849
TU65418 lncRNA upstream 7081 53590881 ~ 53591113 (+) True G58845
TU65416 lncRNA upstream 8033 53589913 ~ 53590161 (+) True G58843
TU65413 lncRNA upstream 10996 53586962 ~ 53587198 (+) True G58840
TU64874 lncRNA upstream 39920 53437586 ~ 53558274 (+) True G58346
TU65438 lncRNA downstream 729 53616821 ~ 53620959 (+) True LOC110516195
TU65445 lncRNA downstream 41710 53657802 ~ 53692144 (+) True G58872
TU65425 lncRNA downstream 97245 53713337 ~ 53713755 (+) True G58852
TU65485 lncRNA downstream 143742 53759834 ~ 53760090 (+) True G58906
TU65486 lncRNA downstream 144567 53760659 ~ 53760870 (+) True G58907
XM_036980134.1 mRNA upstream 40585 53491846 ~ 53557609 (+) False LOC110525170
XR_005052127.1 mRNA downstream 16738 53632830 ~ 53680266 (+) False LOC118936380
XM_036980243.1 mRNA downstream 16739 53632831 ~ 53646696 (+) False LOC118936380
XM_036980287.1 mRNA downstream 16739 53632831 ~ 53673886 (+) False LOC118936380
XM_036980259.1 mRNA downstream 16739 53632831 ~ 53680319 (+) False LOC118936380
XM_036980210.1 mRNA downstream 16739 53632831 ~ 53680352 (+) False LOC118936380
TU62774 other upstream 2147259 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3514198 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4704282 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5214937 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 5573236 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 50123 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 372048 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 428757 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 1105096 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2289416 55905508 ~ 55923376 (+) True G61202

Expression Profile