RNA id: XM_036981345.1


Basic Information

Item Value
RNA id XM_036981345.1
length 4860
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110525977
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60130315 ~ 60172542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCAGTGTCGCAGTGCTCCAGGAGGGCTTTGCATTTTTAATCGATGCTGACTGTAGTGATTAACACTGCTGTTCTACACACGGATGCAAAACAGAGGGAGGacaagggagagagtgagagggagtgtTTTTGAGTGTGTCCATGCGTACGGAGGGAGGACTGAAGGCAGCTGTTTCCAGCAGAGCAGAGACCTACAACATGTGAGAAGATGTCTGTTGGAGGCTGCGCTTGCCCGGgCTGTTCGTCTAAGTCGTTCAAGCTGTACTCCCCCAAGGAGCCCGGCCCTAACGGCAGTGCCTTCCCCCCCTTCCACCCCGGCACCATGCTGGACAGGGACGTAGGGCCAACACCAATGTACCCCCCGTCATACCTAGAGCCTGGCATGGGGAGACCAACACCATACGGCAACCAGACAGACTACAGGATATTTGAGCTCAACAAACGGCTACAAAACTGGACAGAGGACTGTGACAATCTCTGGTGGGATGCCTTCACCACAGAGTTCTTTGAGGATGATGCCATGCTCACCATCACCTTTTGTCTGGAGGACGGGCCTAAACGATACACTATCGGCCGGACATTGATCCCGCGGTACTTCCGGAGTATCTTTGAAGGCGGCGCCACTGAGCTGTTCTACACATTGAAGCACCCTAAAGAGTCCTTCCACACAAACTTTGTGTCTCTGGACTGTGACCAGTGCACCATGGTTACACAGAACGGCAAGCCCATGTTCACACAGGTGTGTGTGGAGGGCCGTCTGTACCTGGAGTTCATGTTTGACGACATGATGAGGATCAAGACGTGGCATTTTAGCATCAGACAACACAGAGAAGTCCTGCCTCGCAGCATACTGGCCATGCACGACCCTCAGATGCTGGATCAGCTGGCTAAAAACATCACAAGATGTGGCCTGTCCAACTCCACACTCAACTACCTCAGGCTGTGTGTGATCTTGGAGCCGATGCAGGAGTTGATGTCCAGACACAAGACCTACAGTCTGAGTCCCAGAGACTGTCTCAAGACCTGCCTCTTCCAGAAGTGGCAACGCATGGTGGCCCCACCAGCTGAGCCAGCCAGACAAGCGCCCAACAAGCGGAGGAAAAGGAAGATGTCTGGCGGAAGCAACATGAGTGCTGGTGGAGGAAACAACAGCAAGAAGAAGAGTCCTGCAAACAacttccctctctccacacagGTACCTGACGTGATGATGGTGGGCGAGCCCACACTGATGGGAGGGGAGTTCGGAGACGAAGATGAACGTCTGATCACGCGGCTGGAGAACGGCCAGTTCGACACGGCCAACGGAGCGGGGGGCCTGGAGGATGAGGACAGTTTTGGTAGCTCCCCTGCTCTGGGGGGCGCACACTCCCCCTGGAACAACAAGACGCCCAGCAGCCAGGACAGCAAGAATGACGCACAGTAGAGCCACAACCATAAACCCTAACTCACCACCCAGATACGCTACTCATCTACCTGCAAAATGAATCCCActcacgctctctctcgcacATGCTCAGTGGTGCTCATCCCCGGCCCTCTTCCCCTTGCTCATCAGTGCTAGGCCTGACTctgttctgtttgtgtgtgtgagggagggagcctGTGCTTACTGGTCAGAGTGTTTGAGTCAGAGCTGGGTTCGGCCGTCTATGATCAGTGCTAGCCATGTTGGCCATTTTGCTGGCGGACATATTGGCGGGTTCTTGTTCCAACCTCGGGTCTCTGGGTGTGTTGCTTGACAGCgtacctctatttctgttgtgcTCACCTCACAGGGAAGGAATACTTAGTTTTATTTATTATCTCTTAGATTTTAGCAGAGTAAAACGTATTGTGTGCACTACAGCATAAATCCAACGTTCAGTTTTTAAAAACTAAATTATTTGTTTTGTAGGACCTGGTTGGAACAAAAACCTGTACACTGCCGGAGCTTGAGGACCGGAGTTGAGAACCGCTACGCTAAACctaaaacacacaacacaacacgcatgcaacacatacatacacacacacacacacacacacaactcgctcgcacgcacacacacgcagacactcTGAGGTACTGGAGAGAGGTCCTACTTCCCCACCTGGACCAGAGCACCAGGCCATACAGAAGTGGGTTTTAATTTTCTATGTTTTTAGTTTtgatttaaattttttatttttatatcaaTTTCTAAAAATGAAACAGATGAGCAAGCAAATAAATGAAACAAAAATGCACCCCAGAATATTCTTTACTGTTTTCCACTATCGTCAATCTATATTTCTTATGAATTGATGGTGTATTTTGTTCTTTTTATTATGGCTTATATAAAGAAATTGTAAAGCATCAGAAACCTGTGACTGGAGAGGAGAATCTACGGTATGTAACTGTATAAATATTACTGTTAGATCATTTGTATTATTGTCATTAAGATACTACATCTGTAATATTGAATTGTCTATGCCTGATACAGTATGTTGCCTGTCAGTGTCAGACATGGTAATGACATTATAACGAATCCCAGTGATTCGGATCTGAAGGGAAAAGCCACCTCTTTTAATGTCCAAGCCTGCACcttaaatggcaccatattccctgtgaactacttttgacaatGACCCATACATAGGGAtatggtcaaaagtggtgcactatatagagcagtggttctcaactgaCTGGTTTGTCCTGGGGACCCAATTTGAACCAGGTCTGTCGCGGTCCAGTATTTGCATTGCGTTGTTTGTTGTTGCCAAAATGTATACTATTTTCAATGCTATATTGATAGTAAATGTATCAATTATATGACAAGGGAATTGCAGTCCCACCTAAATGTTTCAATTTTGCCCCTATTCTTGAAGAATGTTAAACTCACTTGTTTGAGATGACAAAATCATCCCAATCTGCTAAATAGTGCTGCTAATAACTCTATATTGAAAATACTGTGGTTTTAAGACAAATAGTTGAGATTAAATTAAATATAGGTTAATTATAATTGTTTGTCGTTTAACTTCAGACTTATTTTTTAACTCACACTCATTCGACCCATTCAAAACCTCACGAGACCCACCAGTTGAGAATCGCTGATTTAGAGGATAGGGTGCCTGTTGAGATCCATCCTAACTCCCTGTCTACTTATCTGCTCAGTACCTCATGTCCACACCTCAGACAGTACATACACGTATTTTCTCTCTCTGATATGTTACGAAAACTTTTGAAGACAATTTTGGCACGGCATTGTAAGATATAAGAAAACAACACATTTTGTGTTGGCTTGCGTTTCCCAATAATTTGTAATCACTATTTTTGAAAGCTACAAACCAAGAAGCTACTTTGCAAGATCCTTTTTAAATATTGATCCCCGAATATGCTAGTTGTTTGTATTAAGAATAATTTTGTGCGCTTTTTCCTCTTATGTTTTTGTGTCTTTGTGCTTGTATATTTAAGGTAGTTTCTGTATAATTGTTATTCTACGTATCCTTCCTTAGATGAACACCCTATGGCATCTGTCCAATGTAAAGAtacatttttttctccatttaaaaaaaaaaaaaaactgtttggaAATTACATTCAAGGGTACAACCACCATTCATGAGAGCTGGCTATGAATTTTTGTTCTAcatacaatttatttattttgataccGATGccaatagctaggtttccatccactttgcgacagattttcatgcaaatattctcaaatctgcataaaacaatatgcgcattttcctaccagagatgtttccatcaaactgacttTTTGCTCATAAAAGGCTTTGTGCGATGACGTAGTAGACAAAAACTAACTTTTGCAGTTAATTCCCATGTATTCAAGTTCAATCGGTTTCCAttacattttcaactctactaatggttttgtcacaaacattgttgtgtttatatagcAAATGTGCACGCTCTAGTTTTGACAcgtgcactctagccaacagctcacagatagtgtgggtaggctacctacataagatgattatggataagagcgatttttattattttattggttAAACTGCAGCCAAATATCTATCATTTCACCAGAATAAGACTCAATATTTagtggaaaggagcatcaagttcATCACTTTGCACATTCACCACCCTATGAagttaatttatttaatctgAAGCCTACtttaaactgcatggtttcccgagttGTAGTGGGAGAACCATATACCATATCGCGTGACTCCCAAGTTTACTAAAATattatggttattatatcaatatttgcgcattacGGTGTTTCACCCCCATTGCACAATTCATTTTAGAGACACAAAAAGATGCCACCATAAAATTGTACCAGcatttcctgtttccatcagccctgTCAATTTTATGCGTCAGGTAATTAATCTGcatgaaatggttggatggaaacctggttaatgaGTTTGCAAGTTCATGTACAATATCTATGCCTTTGCCCCCAATGTCATTTTGTAGGCTTTTCTGGCTATGTCATCTCAACTATACCTCACATTTTCAATAAATGACCCCAATATCACGATCAACAGTCAGATGTCTGAAAAGACTAGAGAATTACATTATTTTCACATGCTTTTCCATACGTTCCTCATAGGTAACTTGACATGATTTCAAGTCAATAGGAAGAAATCACCATAGGGGGAAAAAAGATTATAGAAAAAGGactacttaaaaaaataaaatctatgTAAAATCCATCAGGACCTAAGTTGAACGAGTAATGCATTTCTCGCTCTCTATATATTAATCTTTAACGCTGCATTGTTGAAagacctgtaagtaagcatttcactgtaagcctacacctgttgtttaggaagcatgtgacaaataaaatttgatttgacagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74069 lncRNA downstream 2624 60127460 ~ 60127691 (-) True G66858
TU74060 lncRNA downstream 31318 60097804 ~ 60098997 (-) True G66850
TU73994 lncRNA downstream 103855 60026237 ~ 60026460 (-) True G66819
TU73955 lncRNA downstream 109092 60017341 ~ 60021223 (-) True LOC118964951
TU73956 lncRNA downstream 113158 60016544 ~ 60017157 (-) False LOC118964951
TU74085 lncRNA upstream 6289 60173662 ~ 60173861 (-) True G66874
TU74087 lncRNA upstream 8587 60175960 ~ 60176302 (-) True G66876
TU74089 lncRNA upstream 10304 60177677 ~ 60177945 (-) True G66878
TU74091 lncRNA upstream 12560 60179933 ~ 60180205 (-) True G66880
TU74117 lncRNA upstream 40110 60207483 ~ 60216533 (-) True G66905
XM_021606503.2 mRNA downstream 6173 60089990 ~ 60124142 (-) False LOC110525964
XM_021606512.2 mRNA downstream 6173 60089990 ~ 60124142 (-) False LOC110525964
XM_021606519.2 mRNA downstream 6173 60089990 ~ 60124142 (-) True LOC110525964
XM_036981284.1 mRNA downstream 65409 60027218 ~ 60064906 (-) False LOC110525944
XM_021606648.2 mRNA upstream 114299 60281672 ~ 60301313 (-) False LOC110526047
XM_021606656.2 mRNA upstream 114299 60281672 ~ 60301313 (-) True LOC110526047
LOC110532500 mRNA upstream 167611 60334984 ~ 60336221 (-) True LOC110532500
XR_002473875.2 mRNA upstream 175216 60342589 ~ 60349188 (-) False LOC110526081
XR_002473877.2 mRNA upstream 175216 60342589 ~ 60349298 (-) False LOC110526081
TU72370 other downstream 975170 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1344698 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2731827 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 3067467 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 262834 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 1514905 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 1814358 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2244149 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3109835 63277208 ~ 63277752 (-) True G70013

Expression Profile