RNA id: TU84158


Basic Information

Item Value
RNA id TU84158
length 2152
RNA type TUCP
GC content 0.34
exon number 1
gene id LOC110527951
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68575379 ~ 68690343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGACCTTGTGAAACTCATTTTGATTTGAGCAGTTGAGGTAAAGGTATTTTATTACTTTCTCTTCCAAAAATGTAGCAACAATTTCATAGCATTCTTGTGTGAAAACGAAGTCCGAAGACTGAACTGACAATATGTCCATCTTGTCAACGACTACGATATCTTGTGCCTTTTACTATGTTTTAACGCAACAGAAGCATTCCTTATGTCATATTGACAACTGTCTTCTAACCCTCCTCACACCTCAAATCAAAATGCACATACGATAATAATTTGAATATTCAAAGTGGTGAATACAACACAAGTCCATATTCATATCCAAAATTGTGTGTTGCAAACCAGGGTCAGTTATTGTGGTTGTTCTTTAGATTTGATAAAGGCCACATTGACCTAGGCAGGCAGTGGGGGTGGACGATTGAGACCACTCTAGCATTACTGACACGAATTGGTAACAGAAATGTAGTCTAAAGGCAAAAGGATCTAACCATTTTAGATAACATTCTGATAAAAAAAACCATTTTGATAGTTAATTTGTTTGGAATGTTTGCCTGAGAATTAGGCTTTACACTGCCCCTATTGATTATGAATTTGAATTAACATGTAATTACACACGAACAGCTCCTATAACACGACCTTTATATAAAAGTGGATCAAGTCAAGTGCTGTTACTGTATTAAAGTAATTACTGTAAATTCAAATTAATGTAAAGTGTTGCCTTATTGTTTTCTTTAACAAAGGTGCTAAAACAAGCAGCCTTCCTCCCAAGGATGTAAATCATTCTGGAAACATGTTTATTTAGTGGAGCGCTTTCGTGCAATGACACATAATGGATGTGCAATTAGGCCATTTTGAAGGTTTTCATTTGATTATAAGATTATTTGGTTCACCTCAAATCTTTCAAACCATCGTCCCCAGTAAATGTGTCACACTACCGCCCACAGTCCTTTATTAAGCTGAGTACTCCTATGAAGATAGTAGCTATATTCAAAGAATCATTCATTCTCTTGTAAGAATGTATTCAAAACACTATTTCACCTTAGTTCATTTACTGTAGGGTCGGTCATCTTTGAAAGTTTGTGTGAATTTAATTTCTGCTTTTTCTCACTGATATTTTGCACAATGGCAGTACTCTTTAGTTTTACAATATCTTCTCTGGACATAATTATTACATGTTTGTATTATATTTCTTGGTATACATTTCCCAGTTGACTTTGTCTTCATcttttactgtatttatatatgaAGTGTACTCTTCATGTAATTATGCATACTTCAAATATAACTATTTAACACATAATATCTTAGAACATGTCACTCATGAAAAAACACGTAACTGATGATAGGTCATGTGAAGTTATTTCTGGACCTGAGCACGACATGTGGTCCTTTGTGAATATGTGTGTTTCTACTGAAAAACACTTCACAAAAACCCTTCAATTATGTCTTCAATTCATTCTTGATTTTAGTCAAAGCCAATTTACAGTTAATGCCTTCTCATGTGAAGAGTACACAGATTTGTTTGAGGAATGGTGTTGTATCCACTGTAACGTTATTGGATTCATCACTTTAGTCGACATTACAGATATGTTTATGCCAGTCTATGATCAATGCATTCTGTTTTGTATTAAGTGGATGTATCACTTCTTGATGTCATCACCATTATGTGTATTTAAAGCAGTTTAGGAGAGAGATAGTTATGGTCATAGAAACCATTTTAGAAGACCGTTATATAGTACTGCGTTATAGTTAACCTGCCGTTGACATTCATTGAGTTGTTTTCTTAACTATCTACTATGTAGTGTGCTAGGTAGAAATCAAGATGTATAATATTATAAAACCAGTTTGTGTGATAATCAGTTTCAGTAGCTAACTGAGAACGGATATGAGGGCATTTATTTCAATGCATTTGATGTAAAAACCATCTGCATGCTGATATTTTTGTTTGTAAGTGTTATTTACTATTTGACAGCAACCTTGACATTTTACAAACTTATGTTCTGTTTCAGCAAAATACTTATGGGAATTTATTTGATATGCCATTTTCTGCACAAAATTAGGAATTATGTCAGTTAAGTGACCTTTTGTAATTTCCTCTGCTGTTACAGACTCTTGAAAATGAATGAAATGTAACATTTGAACATTGAATTGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84161 lncRNA downstream 6394 68568934 ~ 68569199 (-) True LOC110527939
TU84165 lncRNA downstream 22161 68553217 ~ 68553432 (-) True G76134
TU83921 lncRNA downstream 138138 68435565 ~ 68437455 (-) True G75916
TU83854 lncRNA downstream 195410 68379943 ~ 68380183 (-) True G75854
TU83852 lncRNA downstream 197838 68377255 ~ 68377755 (-) True G75852
TU84162 lncRNA upstream 1088 68578832 ~ 68579190 (-) False LOC110527951
TU84392 lncRNA upstream 123350 68701094 ~ 68701345 (-) True G76341
TU84430 lncRNA upstream 149524 68727268 ~ 68727552 (-) True G76369
TU84560 lncRNA upstream 321910 68899654 ~ 68899916 (-) True G76491
TU84561 lncRNA upstream 322884 68900628 ~ 68900878 (-) True G76492
XM_021609585.2 mRNA downstream 471 68555998 ~ 68575122 (-) False LOC110527939
XM_036983677.1 mRNA downstream 471 68558623 ~ 68575122 (-) False LOC110527939
XM_021609578.2 mRNA downstream 471 68558624 ~ 68575122 (-) False LOC110527939
XM_021609531.2 mRNA downstream 99138 68466950 ~ 68476455 (-) True hells
XM_021609541.2 mRNA downstream 99145 68466950 ~ 68476448 (-) False hells
XM_021609805.2 mRNA upstream 2102 68579846 ~ 68690332 (-) False LOC110527951
XM_021609645.2 mRNA upstream 2102 68579846 ~ 68690338 (-) False LOC110527951
XM_021609687.2 mRNA upstream 2102 68579846 ~ 68690342 (-) False LOC110527951
XR_005051486.1 mRNA upstream 127949 68705693 ~ 68742071 (-) True LOC118964446
XM_036983826.1 mRNA upstream 191481 68769225 ~ 68848668 (-) False LOC110528038
TU83653 other downstream 363887 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 413591 68157961 ~ 68162002 (-) True sdhaf4
TU83338 other downstream 893863 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 893863 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 1187549 67386509 ~ 67388044 (-) True LOC110527584
TU84152 other upstream 61632 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 1505096 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 1505096 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other upstream 1505096 70082840 ~ 70085009 (-) False LOC118965321
TU86510 other upstream 1508194 70085938 ~ 70087657 (-) False LOC118965321

Expression Profile