RNA id: TU84430


Basic Information

Item Value
RNA id TU84430
length 285
lncRNA type intronic
GC content 0.41
exon number 1
gene id G76369
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68727268 ~ 68727552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacagagatttgtcttccaacaagacaatgatccaaaacataaagcataatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcaagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84392 lncRNA downstream 25923 68701094 ~ 68701345 (-) True G76341
TU84162 lncRNA downstream 148078 68578832 ~ 68579190 (-) False LOC110527951
TU84161 lncRNA downstream 158069 68568934 ~ 68569199 (-) True LOC110527939
TU84165 lncRNA downstream 173836 68553217 ~ 68553432 (-) True G76134
TU83921 lncRNA downstream 289813 68435565 ~ 68437455 (-) True G75916
TU84560 lncRNA upstream 172102 68899654 ~ 68899916 (-) True G76491
TU84561 lncRNA upstream 173076 68900628 ~ 68900878 (-) True G76492
TU84531 lncRNA upstream 181626 68909178 ~ 68921945 (-) True LOC110528072
TU84568 lncRNA upstream 203685 68931237 ~ 68938082 (-) True G76499
TU84570 lncRNA upstream 211984 68939536 ~ 68939755 (-) True G76500
XM_021609677.2 mRNA downstream 36925 68575379 ~ 68690343 (-) False LOC110527951
XM_021609614.2 mRNA downstream 36926 68575379 ~ 68690342 (-) False LOC110527951
XM_021609630.2 mRNA downstream 36926 68575379 ~ 68690342 (-) False LOC110527951
XM_021609687.2 mRNA downstream 36926 68579846 ~ 68690342 (-) False LOC110527951
XM_036983723.1 mRNA downstream 36927 68575379 ~ 68690341 (-) False LOC110527951
XM_036983826.1 mRNA upstream 41673 68769225 ~ 68848668 (-) False LOC110528038
XM_036983829.1 mRNA upstream 41673 68769225 ~ 68848668 (-) False LOC110528038
XM_036983834.1 mRNA upstream 41673 68769225 ~ 68848668 (-) False LOC110528038
XM_036983836.1 mRNA upstream 41673 68769225 ~ 68848668 (-) False LOC110528038
XM_036983838.1 mRNA upstream 41673 68769225 ~ 68848668 (-) False LOC110528038
TU84152 other downstream 37039 68639376 ~ 68690229 (-) True LOC110527951
TU84158 other downstream 149524 68575593 ~ 68577744 (-) False LOC110527951
TU83653 other downstream 515562 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 565266 68157961 ~ 68162002 (-) True sdhaf4
TU83339 other downstream 1045538 67669589 ~ 67681730 (-) True LOC110527687
TU86507 other upstream 1355288 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 1355288 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other upstream 1355288 70082840 ~ 70085009 (-) False LOC118965321
TU86510 other upstream 1358386 70085938 ~ 70087657 (-) False LOC118965321
TU86511 other upstream 1358386 70085938 ~ 70088714 (-) True LOC118965321

Expression Profile