RNA id: TU9312


Basic Information

Item Value
RNA id TU9312
length 2712
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G7581
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8874781 ~ 8877527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcggcttttgtggagcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctggttcgcgcccgggtatgggcgaggggacggtttaaaaattatactgttacacgacacaaacaacaacacagagttacacatggaataaacaataacacaatagaaaaaatctgtatacagtgtgtgcaaatgagacTGCCACCAGACTGCCAGAGAACGGGTGTCCACTGGTGGcaagccgacgcttggcattgtgcacggagatcttaggcttgtgtgaggctgctcacCCAtggaacccatttcatgaagatcccgatgaacagttattgtactgatgttgcttccagaggcagtttggaactcggtagtaagtgttggaaccgaggacagatgatttttgcacgctacgagcttcagcactcggcggtcccattctgtgagcttgtgtgtcctatcacttcgcagctgagctattgttgctcctagacgtttccacttcacaataacagcatttacagttgaccggggcagctttagcagggcagaattTTGACCAACTGGAAAGGTGTCGTCCTATgttggtgccacgttgaaagtcacagagcttttcagtaaggccattctactgccaatgtttgtctatggagattgcatggctgtgtgctcgattttatacacctgtctgcaacagatgtggctgaaatagccaaatccactaatttgaaaggatgtccacatacttttgtaaatatactgtatgtagtgtcGGCTATATCTGGACAAAAAGTAGACCTGTTATTACAGTAACGCTTTtatcagacctcaggataagacccagatgcagacagctagagtcacagATGTTTATTGACCCAAACAGGGGGCAAAGCAAAAGACAGGTCAGAGGTCCATAATCCAGGGCATAGTCAAGAAGGTACAGAACAGTAGGCAGGCTtggagtcagggcaggcagaatggccaGAATCAgggaaactaggaaacagaacttgagcatgcAGGGAGATGGGACaacacgctggtaagacctgacaagacgacctggcaaaagacaaacagagaacacaggtataaatacactggggataatgaggaagatgggggccacctggagggggttggagacaagcacaaagacaggtgaaacggaTAAGGGTGTGACAGCTGTTACCTATAAAATATAAAGTATTGTCTGAAATAATTTATTTATCTTACAAAAACTTGAAGCAAATTTGGATACATAGGCCTATGCAGCTTCTAAGTAGCCTAGTATGGACTTGAGCGTTTGGGCAAAATATGTCAAATTTATTTCACAATCATAAAATAAACGCCTATAGCACAAGCGGTGCAATTTGtagccttcttcttcttctatgatattGTGGTGGTCCGCAAACAAACGTTTAAAGTGCATGCcaccaaccaattgtgctatcaATCATGAGCTGTGTtcaaatacccatactaacatactgtatactacataatTCATGAGTaaatactacatactattagttcattttagtatactgtaaagaATGGgatcctttcagttgatgctgttgctatgcaacctcttgttagctagttagcataacaCATGACGAGTTAGACATTTTACGACTTcgggtgtgttcttaaattcaatatggagtgccagagtgcgctcgtaaattcagagcattgtcagattgtcctTTTCACTCTCCgagtgcacactggacgctcgggccgaggagtagggttgatttgagcgttctgacattacaatggcagtcaagcatcctagctaatgttggctagcttgctagctacttccagacacaaatgagaccactctgaccattttacccACCCTAGCAGACCTGGTTAtgcagttttcatgttatccagtgagttggtgactgtaactgtgctgctggcaaaaaTGTAAGTACGCTTTTTTGCCAACctttactgacaccagccatgttcaacgggtgttgagcactTGTAAATTCATTATTCTGCACTTTGGTagtcagacgagagtgctctgaaatcggagtagatagccagagcgaatttaagAAAGCACccaaatgtccattgagaacgcgcaatgtggttcgtaaggacagcgtagctaacaaattcaTAACCGGTTAATCTCTGGTAGTGAAGTGAGCTGTATCATAGTCCTGTCACTGCTTCACTCCCTGGCTACGCGGATGCTCCTCCTCCATGACAATATCCGTCtctgtaaggtaacttatttgaaaagtcattatttGATTACATTGATCAACATGTTCTTaatatttgtcataattagttaaagcaatgaatttgtatctgcTGTTGTTGTACTTGGCtgcatattttccgccattttcttAAAATCTGAAAACGATGTGAAACCACGCCCATTTcatgaagaattgcattatgggccctaaattATGAAAATAGTGTCCTCTGCGTCTATACTTCATATTTTGGcgaatttagtacgacatccgggaacttttggcatactaactatatccatactatgaacaataagcatactatatactcaattcacgccacaaatagtatggttagtgcTGTTAGTATGAGTATTGGAACACAGCTATGGTCTTCCTAATTACGTACTACTaagaaaatacaatttaaaaaccaAATAAATCCCTACTAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9300 lncRNA upstream 9604 8864181 ~ 8865177 (+) True G7573
TU9164 lncRNA upstream 43401 8799490 ~ 8831380 (+) True LOC118966103
TU9139 lncRNA upstream 66615 8756471 ~ 8808166 (+) True G7436
TU9143 lncRNA upstream 77417 8768524 ~ 8797364 (+) True G7440
TU9113 lncRNA upstream 106733 8711514 ~ 8768048 (+) True G7414
TU9478 lncRNA downstream 253077 9130604 ~ 9130845 (+) True G7740
TU9495 lncRNA downstream 276011 9153538 ~ 9153843 (+) True G7757
TU9514 lncRNA downstream 317828 9195355 ~ 9195727 (+) True G7776
TU9523 lncRNA downstream 339692 9217219 ~ 9218494 (+) True G7780
TU9803 lncRNA downstream 353999 9231526 ~ 9231756 (+) True G8000
XM_021615003.2 mRNA upstream 3497 8868110 ~ 8871284 (+) True ndufb5
LOC118966103 mRNA upstream 23409 8799458 ~ 8851372 (+) False LOC118966103
XM_036989295.1 mRNA upstream 75814 8790231 ~ 8798967 (+) True LOC118966266
XM_036989294.1 mRNA upstream 103643 8764989 ~ 8771138 (+) True LOC110510915
XM_036987965.1 mRNA upstream 127077 8721570 ~ 8747704 (+) False LOC118936489
XM_036989225.1 mRNA downstream 64 8877591 ~ 8915400 (+) False usp13
XM_036989170.1 mRNA downstream 66 8877593 ~ 8915400 (+) False usp13
XM_036989273.1 mRNA downstream 892 8878419 ~ 8915400 (+) True usp13
XM_021614466.2 mRNA downstream 294441 9171968 ~ 9183082 (+) False LOC110531220
XM_036989375.1 mRNA downstream 294441 9171968 ~ 9183082 (+) False LOC110531220
TU8596 other upstream 618903 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 644546 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 837627 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 988874 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1149172 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 581421 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1106248 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1107855 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1263717 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2599137 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile