RNA id: TU14839


Basic Information

Item Value
RNA id TU14839
length 4394
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G12499
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13779607 ~ 13788862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGTTTATTTTCCTGCATGGAATGGTGAACATAAAAAAAGATGCCTGGATGCATTTATAATAGGGGCATCCTTTGTCTATGTCATTGTCTTCTGCCTAAACTAAAAAAAAATTATGCATAAAAAAACGCTATATTTTCTTACCAATTTCCTTAAAATTACCTAAATTTACCTTCATCAACACTGATGCAACCAATAACCTTcaaaacatacagtatactgtaacaTCCATGTACAATGGGCTTTTCACCTCAATACCCTGTACTTTTTAAGTATAGGAATATGCTGTACCATCAAAAGAAGAGAAAGtccttaaatacatttttaaaaaacaaaaaaaaggaaaACGGGAAAGTTTTCAACTTAAATCCAGTTCCCAGAGAACAAACAAACCTCATTCTATTACTGTGGCCTTAATACAAACAATCAGAACATTCACAACACTAGTTTTTCTCCTCATTTAATCAATGTTACAAAAGTCCTGCATTATAAAATAGGGCAGCTTTAAAATCAATGTAATTAATAAAACTAtacaacatacacacaccacgTCTCCCACAGTCAGGGCTTTCAGCCCTGCCTGCTCCATCGCTTCCTTGTCTTTTTTAGGTGTTCCTTTGTCATCATCAACTCTTCTCCCCACTTCTATACCCAGAACTAAATTACACACAACACAAGAACAAAAACAGACTGCCCAAACTATTGCTTAGTATTTCTGTCTTTAAAAAGGGTGTAATTTTGTCgtatcttacacacacacacagccaaatcTTGCTGATTAGATGCTAGGCTGTTCACAACaagtttttgtgacaaaaaaaTGTCCGTGCAATTGTTTTTTCCCTTCGCTTTTAAGCCGTGGAAGCCGTTTCTTTTCAATAATTCTCACTATTGTCATTTGTTTCACATTTAGTGCAGATAATTAGGAAAGTAATGCCCAACTCATCGCTAAAGGGTAGGCAAGGACAAAGATAAAAACTGTCACACTAAAGGACAAACACAACCCACGAAGTCTTACTACTAAACCATCACGAAGgcttcccccaaaaaacatttaatTGACTTGTTTAACTGATAAATGTAATAGACAGATCAACAGGTAAACAATGAATCTACGTCTGGAAGTCTGTTGAAATGGAGGAAATAGAAAGTGGCATTTTATTTGTTGGACGTCATATTTTTTTGTCTGTCAAATGTGGATTTTGTGATGGAGAGGAAGTTTGACTTGTTTAAGACTTGCTTgtgaaccaccccccccccccccccccccccccccccccaccaccaccgctCCAAAAAAAGGAGAACCCTAATATATTTTGCGGTCGACTTGTTAGTGTTGAAAACAAAGACAGTAGAATACCCGAGCGAGGCTGACTGGGCTTTGCGAGCCCTTTGTTCTCCAGGAGTGGGTCTGCCTAAGGGACCGACCACCAACCATGTAGCCAGTCAAGTGCAACCTAACtgtggtaaaaaataaaaaataaacatcacAAACAAATGACTAAATGACTGTCTACATGAGTGCAAGCAGCTATTGCATATTCTTTTCTCTTTATTCATTTCTGAATAAAAGAAATATTAAAAAAAGGAAAACTCCAAAGCCAAAAGAAGTTTCCATTTAGAAATTTCAGCAACATCCATAAATATCTATAGATTAGTATTCTCAACACAAAGAAGGGTTAAGGGTCGATGACTGGGGGGTTAACTAAACTATCTTCAAGATATAAAGAGGTCTATTCCTACTTACGGAATGAGTAAAAAGGGGGCCATGTCGGGGTGATTGACGCTGGCCTAGTTAAACAGTAGTACAAGACAGATATAGTGTTTCAGGTCTTCTACACACACAGCACCTCCATGGTGCATCATAGTGTGCTGTCGTACAGGCCTGAGATGTCTTCCATTTCATCATTCATGTTTCTTATCAGTATAACAACGCTGATTCAGTTTCACCACAATGGGAGGTGGGGGATGAAAACAAATAAGAAACAAGATCAACTCTCCACATTGGAACATTGTGCAACAGCTCGGGACTAGACCATCGCTCAAGGCACATTTATGAGGAACAATTGTTTCGTGCAATTAGAGAACATACGAACTAAATATATACTTTAAGATtagagtttttttgttgttgatcatttcaAGAGGGAACGAAAGAGGAAAAACGATTCAGAAATGATGAGAAGCGAAGAAGAGTCTGAAAGACGTTCAAGCTGGTTGATTGTGAAGGCCAGCAGTAAAAAAAGCCTCTCGAAGGGCCAAACAGATAGAGTCTATTGGCAAGTGCCTGATGTTGGGATTAGGATACTGTGTCTTTATTCACTAACTCTAATCTATGTAAAGGTTTGTCACTAACACTACAACATGCagataaaaaaacaacatttttaatACTTTTATTCAGTTTTGATCGAGGGTGGATGAGTCAGTCTTaacaatgtatatatatatatatatatatatatatatatatagtatagtaaagAAAAACAAAACTTCAATAAGTGGTAAATTGCATGCGAAGCAACTGAAAAGCTTCGCCGTCTGGTTGCAATCTTGCCTTGATGTAGATATCAATGTGTTTTCAACACAAATGGTCACTCTTTCTCACTCAACTACAATCCTCTGATTAGACTCCCAGCCCATAAACCAACTGCAGGAACAAGTGCTTCTGATTGGACAAGGCTTAGAGAAGGCCTAGCCAATCAAACAGGCGAACCAGAACTTGGATGCGCGGTAAAGTGGAGATTTATGTTTTCGatatttgctcacattgtatgtTCTTGATTTTGCGTCATGAGAAATTTCAACTACTACTTATTTCTTTTAAAATCAAGTGCTTTCTTAAAATAAGTTAATCACTTTGCTTTTTAAAAATTAATAGCAGACTAGATTCTTAGCTACAAGTTTAAAATGACAATATTTCTAAAAGggatttacattttttacattctaCGATACTAGCAAATTTACAAgatgaacaaacaaacaaataaaagaCAACAAAAGCTCAATACATCTGTTATTTTCTCACCAGACCATCGTGCTAGTTGACTTTTTTTTGTACCCCGATATTTTAGAGGTGTGAATGGACGAGGAAGAAAAATATATGATTTTCAACTATTTTAACGACATATCCTACAAAGATATTTAATTATCCAACCACTATCCAACGAAATTGCACTGTCCTCAATTCAATATTCCACTGTTCACGATAGTCATAGATGTCTCCAGTCAGTTTGTAGAATTATAGACCTTCGCCCTTTTGCATTGTATAGCATTGTAAAACCGTTAGTTTGAACTGAAATGACCTCTATACAAAAATGTAACATGAACAAGCCTCCCAGTCAGAGGTTTTCTCACAAGCTTCTCATTGAAATACTTCTCTTCTTGCTGCAGGCTTTAAACCAGTTTCAATATGTCACCTGATTGACCGATATTAAACATGAATACCCCATCCCCTCTCTGGTCCCCTGTGAGTTCATAGTGTTGGTTGTTCTCCTCTGCATGGTCTTTCAGCTGCACTGATGTCCCTGGAAAAGCCCCGTGGTGGGGTGAAGACCTTCAGACCTTCAGACTCTTGGCTGTGGGGGAGTGTCCCTCCTCAGGGTGGGTGCTGGGTAGGTCTGGTTTGGGGTAGGGTGGGGAGACTGAGAGGTATTAACTGGTTGGTATCTGACCCAGCTAAAACCTCTACCTCCGTGAGCCACTGAACCGAAAACAGAGTCCGGTAACAACCATAGAACAAAAGGAACAAGAGCTCTGATCTTCCTCTCGTTTCGGGACATGTGACGCCAGCAGAGCtttatacacacatgtacacggGACTCTTAGGTCTCTGTGCCGGACCTTCTCCACAGGTCGGCTACGGCAACGAAGGGTTGAGGGAAGCTCTTTTATTTAGTCAGGTGATGTCTCCCCCTCTGCGGCAAAGTGGGGACGACGAgaagaaatacaaaaataaacaaacacaacGTGTACCAGGAAACATACGCTAGCTCTTTCTTGGAACTCCAGCTAGCACATCCAATAGACAGCTGGGgggactggtactatatatgaaTATAGACATATGAACCATATGAATGAGGGTATATATGGGCTGTATAGATATATAGTATGTACGTGTGTAAGCAGTCAGTAGCTCTGCTCTTGTTTTTGGGGGATGGGAGAGGGCGGGGTGGTCTGTTGTAGCCATGCAGTGACAGATTTGAGGGGTTGGGCTTCTCTCTGTCAAACAGGTGAGCACGTTTGCAGGGTTTCAGGTTAGGTCACACTCAGGGGAGAAAGTAGGGGGTCCAGCGATCTGTCCAGCGGGCTGTCCAGCGATCTGTCCAGTGGGCTTTCCAGCGATCTGTCCAGCGGGCTGCTAGGGGGTCTGGAGTCCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14829 lncRNA upstream 8574 13775533 ~ 13775871 (+) True G12497
TU14712 lncRNA upstream 119209 13629753 ~ 13665236 (+) True G12412
TU14695 lncRNA upstream 133078 13627858 ~ 13651367 (+) False G12410
TU14844 lncRNA downstream 7073 13795935 ~ 13799297 (+) False G12504
TU14845 lncRNA downstream 7408 13796270 ~ 13798641 (+) True G12504
TU14851 lncRNA downstream 23074 13811936 ~ 13813273 (+) True G12509
TU14877 lncRNA downstream 64629 13853491 ~ 13853770 (+) True G12535
TU14917 lncRNA downstream 145238 13934100 ~ 13994776 (+) True G12573
XM_036946379.1 mRNA upstream 30770 13734763 ~ 13753675 (+) True tm2d1
XM_036946195.1 mRNA upstream 342917 13436016 ~ 13441528 (+) True pdzk1ip1
XM_021556420.2 mRNA upstream 353328 13425566 ~ 13431117 (+) True LOC110485322
XM_021556316.2 mRNA upstream 373155 13409282 ~ 13411290 (+) True LOC110485223
XM_021625573.2 mRNA upstream 488993 13278690 ~ 13295452 (+) False LOC110538561
XM_021589094.2 mRNA downstream 351634 14140496 ~ 14144946 (+) True LOC110508285
XM_021556786.2 mRNA downstream 373523 14162385 ~ 14171600 (+) False LOC110485648
XM_021556865.2 mRNA downstream 373523 14162385 ~ 14171600 (+) False LOC110485648
XM_021556939.2 mRNA downstream 373523 14162385 ~ 14171600 (+) False LOC110485648
XM_021557022.2 mRNA downstream 373523 14162385 ~ 14171600 (+) False LOC110485648
TU14688 other upstream 152555 13630036 ~ 13631890 (+) False G12410
TU14679 other upstream 153157 13628863 ~ 13631288 (+) False G12410
TU14216 other upstream 524449 13238613 ~ 13259996 (+) True LOC110538561
TU11995 other upstream 2270063 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 3623159 10141244 ~ 10161286 (+) True gipc3
TU15077 other downstream 403594 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 890488 14679350 ~ 14679578 (+) True G13380
TU15839 other downstream 890836 14679698 ~ 14680027 (+) True G13381
TU15850 other downstream 911314 14700176 ~ 14700730 (+) True G13391
TU15897 other downstream 1022909 14811771 ~ 14812624 (+) True G13434

Expression Profile