RNA id: TU14995



Basic Information


Item Value
RNA id TU14995
length 588
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G12644
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14033236 ~ 14034005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACGGCGCgcttgggacagagggaggaatgccGCGGCGCCTATATTGCGAACGAAAAAACGTCAATAAGTATAGGCTATAGCGCGTTCTTGCTGCTTTAGCACCAAAGCATTGTTGCAATGCTGGACATCTAAGCAGTATTATACCATCACAATGAGCATCTATCTAAGAACTCCACTGATGGCGAAGTTTACGGCTGGTCGACTGAAACTAACACCAATTCTTTGCAGTGGATTTTCTACTGCTTCCCAATGGAGATATGGCAAATATCAACCATAGGTGTGCCGGTGGGTCGTATTGAATTAGAAGGCATGCATAATCATGTCATATCACAGTCGTAGgcctgtttgatgcttctacATTCAATTTAAGTGCGATTGGATTTCTATTTCTGAACTGTGTGGTAGCAGGCAAGTTAAGCAGCATATCGACATGATTGAATTGTTGTGGGCTGTATGTATTACTGTGTTGATTTGGCCCTTGCGGTTGAAAGCAGTTAGATATTTTGTGTGAAAGAGACCTATTCTGCAACTGTTGCCGATATAGCTGATATTATGTATGCGAGTGTGGCTAAACATTTTACAACGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14917 lncRNA upstream 38606 13934100 ~ 13994776 (+) True G12573
TU14932 lncRNA upstream 72496 13960455 ~ 13960886 (+) True G12587
TU14924 lncRNA upstream 81044 13947329 ~ 13952338 (+) False G12580
TU14925 lncRNA upstream 84742 13947329 ~ 13948640 (+) True G12580
TU14877 lncRNA upstream 179612 13853491 ~ 13853770 (+) True G12535
TU15009 lncRNA downstream 6749 14040718 ~ 14040988 (+) True G12650
TU15010 lncRNA downstream 9348 14043317 ~ 14043524 (+) True G12651
TU15012 lncRNA downstream 15600 14049569 ~ 14049774 (+) True G12653
TU15013 lncRNA downstream 17258 14051227 ~ 14051436 (+) True G12654
TU15014 lncRNA downstream 18194 14052163 ~ 14052449 (+) True G12655
XM_036946379.1 mRNA upstream 279707 13734763 ~ 13753675 (+) True tm2d1
XM_036946195.1 mRNA upstream 591854 13436016 ~ 13441528 (+) True pdzk1ip1
XM_021556420.2 mRNA upstream 602265 13425566 ~ 13431117 (+) True LOC110485322
XM_021556316.2 mRNA upstream 622092 13409282 ~ 13411290 (+) True LOC110485223
XM_021625573.2 mRNA upstream 737930 13278690 ~ 13295452 (+) False LOC110538561
XM_021589094.2 mRNA downstream 106527 14140496 ~ 14144946 (+) True LOC110508285
XM_021556786.2 mRNA downstream 128416 14162385 ~ 14171600 (+) False LOC110485648
XM_021556865.2 mRNA downstream 128416 14162385 ~ 14171600 (+) False LOC110485648
XM_021556939.2 mRNA downstream 128416 14162385 ~ 14171600 (+) False LOC110485648
XM_021557022.2 mRNA downstream 128416 14162385 ~ 14171600 (+) False LOC110485648
TU14688 other upstream 401492 13630036 ~ 13631890 (+) False G12410
TU14679 other upstream 402094 13628863 ~ 13631288 (+) False G12410
TU14216 other upstream 773386 13238613 ~ 13259996 (+) True LOC110538561
TU11995 other upstream 2519000 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 3872096 10141244 ~ 10161286 (+) True gipc3
TU15077 other downstream 158487 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 645381 14679350 ~ 14679578 (+) True G13380
TU15839 other downstream 645729 14679698 ~ 14680027 (+) True G13381
TU15850 other downstream 666207 14700176 ~ 14700730 (+) True G13391
TU15897 other downstream 777802 14811771 ~ 14812624 (+) True G13434

Expression Profile