RNA id: TU16257


Basic Information

Item Value
RNA id TU16257
length 1798
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G13762
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15068529 ~ 15070869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACAAACCAACCCCCATGAAAAGAGCACAGAAAAGTGAATTGTTAGACAATGTTTTAATACGTGAGCATCACGCAATTATCATAATCCATGGCAGATACCAAAATACATAGATTGAGTAGGACATAGGAAAACAGTATTTACAGGCACACTATTACAAATGTACAAGTCTTTATAAAACAAAGACACTGTAGTGACCAGCAAATTCACAACAGATTGCGTTAGCATTGAGTCACATTCAGTCCCATAATTTTATCCACGTTAAAAAGGATAACGTTACATTTCATGAATTGATACATGGCGCTTTTGGTACGTTACAATGTAGACGAATAGTGTAGAAGCACGTTTCAAAGTGTTGACTATCAAGAGCCCATCGGTAACATTTTTATCACTTCCTAAAGCACCTCTCGAACATTATTTCAATAGATGTTCCATGTAAATAGCTACTACAGTAGGCCTACTTTCATTCTGATGTTTGGGGAACTCCAAATTTACTAGGTACTCAGTCCACCACGTGTTTGTGGGGGTAGTTGGTGGAACTTTGCTTCATGTTCCAGCTTTATTCATATCCCCAAGAGGTCAAAACCACAGTTTCAATGTTTAAAAAGCGACAATTGCAGTACTCCAAGGGTTGAGGTTTTTTAACATTTGATCACAACAGATTTGTCCTGAGTCACTGTCCTCTGCCTCGGAATCGGGCTGCGCTCCGTCTTCACTACTCAAGAGTCCAGAAAAACTGGAACCGAATATTGTTATCAAACTCGAGACATTGCTGGTGTCCATTTCTTCGGTGTCCACTTTCTTTTCGTCGTTTTTAGAAATTAGAGTTGAGGACATTACTTTCGTTTTTTTCGGCAGAGAGTCTGTGAGTTCAGAGTCTTCGGCACTCCGTTTCCTGTTAGTGCAAGTATGGGGCACTATGGGCTCGTGCAAATTTTCCTCCACTGATTCACCGTCGTCCGTCTGGCAGCCGTTCGGCGTCTCAGCAGCCTGTTTTGGATTACTCGGAGGGGGACCACTAATACAGTTGGATGAGATAGTAGTAACAACATTGGAGACCTCACATGTAGGACTAGCCTCTAGGCTCTCTTCCGGTGTTTTCAGCTCGCTGCATCCTAAATCCAAAACTCCATTTTCGGCGTGATCTTGCTCACCACTCGCTTCAGATTCAACGTCCAGTGCCGCGTGGGATTCGACCACATTGCCGGGCTCCTGCTTGTCCACGGCCACTTCACTTTGCCCGTCTGATTCAGGCAGGCTCTCTGTCGATCCGGGGACCAATTTGTCTTGTTCTGAGTCCATGTACTCTCCCTCACACCACTCTCTTGCTTGCTGAGCACTCAGGCATATCCCGCCGTAGTAGTCACGAAGGTATACTTGCCGGGCACTACGTAGAACCAGGGAGACCAGTAGATTTTTGTGTAGTTTGATCCCACCACGTTGAACCCTGGAGTTGTAAATCTTCCCCAGTGAAATACTCATAATCCGATGCGCCTCAACTTTATACTCCATGATTAAACACTGAGGTTGTTAAGAAAAATCAAAGTCTCTCGTGTTTCAGTTCTTGTGGAAACACAAATGGTTAAAAGTAGCCTAATCCTCAAATCCCCGACGGAGTTGTTTGTCCTATACCGTAGCGACTAATTGCTTCCAAATGGTACTGAATTCTCTAAAGTGACGTAACTGCTTGTTTGTTTTAGAAACAGACATTTGATAAACGCAAGATGTGCTTCGTCGTTTCTATGTGCTGAAGCAAATGAGTGTATGGTCTAAGAAATTAAAGGCTAATCAATAGCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16247 lncRNA upstream 2486 15066377 ~ 15066586 (+) True G13759
TU16245 lncRNA upstream 3792 15065008 ~ 15065280 (+) True G13757
TU16238 lncRNA upstream 10189 15058589 ~ 15058883 (+) True G13750
TU16218 lncRNA upstream 25915 15042893 ~ 15043157 (+) True G13731
TU16215 lncRNA upstream 27770 15040982 ~ 15041302 (+) True G13728
TU16264 lncRNA downstream 22967 15093836 ~ 15094100 (+) True G13767
TU16265 lncRNA downstream 23253 15094122 ~ 15094400 (+) True G13768
TU16266 lncRNA downstream 24093 15094962 ~ 15095176 (+) True G13769
TU16269 lncRNA downstream 26604 15097473 ~ 15097685 (+) True G13772
TU16271 lncRNA downstream 29065 15099934 ~ 15100187 (+) True G13774
NM_001160664.2 mRNA upstream 42537 15024419 ~ 15026535 (+) True elav1
XM_021559606.2 mRNA upstream 49980 15016138 ~ 15019092 (+) False LOC110487655
XM_036948429.1 mRNA upstream 49980 15016425 ~ 15019092 (+) True LOC110487655
XM_036948336.1 mRNA upstream 65645 14993937 ~ 15003427 (+) True LOC110487584
XM_036947732.1 mRNA upstream 573224 14464252 ~ 14495848 (+) True LOC110486505
XM_036948626.1 mRNA downstream 4315 15075184 ~ 15080304 (+) False LOC110487930
XM_021559962.2 mRNA downstream 4338 15075207 ~ 15079441 (+) False LOC110487930
XM_021559884.2 mRNA downstream 4339 15075208 ~ 15080304 (+) True LOC110487930
LOC110529430 mRNA downstream 46981 15117850 ~ 15126002 (+) True LOC110529430
XM_036949018.1 mRNA downstream 59657 15130526 ~ 15157032 (+) False LOC110488062
TU16116 other upstream 107069 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 256448 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 368342 14700176 ~ 14700730 (+) True G13391
TU15839 other upstream 389045 14679698 ~ 14680027 (+) True G13381
TU15838 other upstream 389494 14679350 ~ 14679578 (+) True G13380
TU16507 other downstream 389035 15459904 ~ 15467988 (+) True sass6
TU17062 other downstream 624172 15695041 ~ 15715682 (+) True LOC110490510
TU18087 other downstream 1508217 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 1845630 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 1892188 16963057 ~ 16967790 (+) True LOC110492876

Expression Profile