RNA id: LOC110529430


Basic Information

Item Value
RNA id LOC110529430
length 3798
RNA type mRNA
GC content 0.54
exon number 19
gene id LOC110529430
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15117850 ~ 15126002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAGCGCCACAATCAATTTACATTCGATTTATCACAATGACCGTTTGTGTTTAACAACGTGGAAAGTGATTCATTACATACGACTttcgttttttttgttgctatcaATTGAAGTTAAATATTAGCGAAACTAGATTGATACATTGTGGATTTAACGCGAATATGGCCGCTCTGATATTGCGGAGGAAATCTTGAAACCACTGCTCGAGTAACATTACAGTTCTCACAACATTTCAGCCAGCCAATACGACTCCGCGGCACGCAAACCGAAATGATAGCTAACGCGTTAGCTGCCTGGCTTGCTATTtagttatttagctagctaactaactatctGATAAGCTAGCTACGTTTGGTGAAGAAGATTACTGTCTGTGCTATGTGGTCATAACTAGGGCTGACTAATAGAAATGAGTTTAAGTGAATTTGAAAGGACAGTCATCTCACGTCCTGGCCAAACCAGAGAATCTGAAAATGACAACAAGGTCATCAGAGAACGCTCTTGCTGCCATCACCTTCCCCAAATCCAAATTAGCCCTATGGGACCCCACATCTAATGGGGATGTGATTAGCCTCCACCTATCCTATTACAGAAATCCCAGACTACTTCTGGTGGAGAGTTCTTCGTTTGGCCCACCGGCATTCCAGAGAGAATAACAAGCCCCAGTTCAGCTGTTACTTGTTGGGGACTATTGCTGTGGATTCTGATGAAGAAGAGGGTGTGACTTTGAACCGGTTTGACCTGGGCCAGGAGCAACCTGGTTCCTCTGAAAAGGTCCCCACTGCCCTGATGCCTGGAGACATCCTGGTGCTGTGTGTATTTGGAACCCAGGGGGTCGCTGCCACAGACACCATGGTTCACTCTGCAGAAGACTTCCACATCTCTTTCAAGGTAACATTAATGTGTAAACGTCTTCACTTAAAATGCACCTGGGAGTCCCTGGACCTGTCCAAGCTGCTGGTCCTACGAGCACACCGTGGCTGCTCCCAGCAAACAGACAGCCTGAGCTTCTGCCTGCGCTGGGCCGCCGTCACCCCCGGTAACACACTGGACGCTGTGCCCATTCGACCCGTGCTCATCACCCCCACGGCCTTGGCCAGGAATCTGAGCGGGCCGACCAGCCTCGCCCAGCCGCTACACAGCAGCGCTAGCCACAAACGAGACTTTCTGACAATGGATCAAAGCAGGAAACTGCTCCTAATACTGGAGTCTGACCCAAAGGCCTACACTCTACCACTGGTGGGACTATTGCTGAGTGGGGTCAACCACATCTCCAACCCCAGGTGTGGTGTTTGAGGTACCTGTTCAGCTCCTCTCTCCAGGACAAGGTAACGTCAGAGGGCGGTGCGTTCCTGGTGGTGTTGTACCCGCTGACCCACAGGGAGCCAGCATTCTACCAGGTCCAGCCCTGCAGGGGTCAGCAGCAGGACATGACCTTCCAACTGCTCACTAGCACCGTGTCACTCACCCTCTACAAGAATGTGGAGGAGTCTGAGGGCCATACTCTGCAGTTTGAGCTCAGTGCTGAGAGCCAAAACATAGAGGCTGAGTTCTTCAGGGAACTGGTGTCCCATGCCTCCTTCACAAGCTCTTCTCTCAAACTTCTCCCTGCGGTAGTGGCAGCATCTCCTCAGAACAGACTGTCTATCAACAACCATGACTCTGGAGTAGAGGACGATGACCTCTCCCCCAGGCCCTCCCCAAACCCCCACCCTCTCACCCAGCAGACCAAGCGGGTCCACCGTCCTGTGCCGGAGCTCTCCATGGTGATGGGCGGCAGCTTCCTTGATGGAAAGACCATGGGCCCCACTCATCCTTCCCCCGCAGCTCTGCAGCCTAGAGGCAGTTGCCCCCCCTCCCACCAGCTCCAACCTGGGGCAACCAGACACCCAGATCAGGGGCCCACCACACTCAGTGGCCCCCCACCCATCAGAAGGCCCCTGACCCCCACCATGGACACTCTGGGTAAGGGCAGCAGAACAGGCTCCTCGCCTAATGGATCAGTCCACCAGGCCAGGCAGTTCCACCAAGCACCAGGTCCCCTCTCTCACAAGTGGGCCGCCCCTGTTGGAGCCCCTCCACACCAGAGCCCCGGTCACCCCTCAGCCCCCATGCCCACTCACCAACAGCCCGCTTCATGTTACCCCCCCTGTACCACCCCAACTACTGTCAGGGAGCTTCATGCACCCACAACAGACCAGATAGACACTTCTGTTCCAACTTCGATGGTAACCCCCCCACCTCTCACATTTCCCCTTCCCACCAAACACACCCTCACCACAGCTCATTGTGCCACCCCATGGGGCCCACACTTACACCATTTCACCGCCCAGGGGCCCTGCTTGGAGCGGCCAACCCCTGTCTGTCAGAACCAGTGTTGCCAGCCCGAGTCAGCAAAGTCTCCCCCCCCCTGGATGGGCCCATGGGCCTCCTGCCCTCTGACACCTACAGAATCCTGGTGGACCAAGACCGGCAGCTCAACTTACTGCAGGCACAGATCCAGAAGCTACTGGCGGCTCAGGGGAAAGGGGGGAGCAGCTCCTCTCCATCCACTGAGCAGGCAGCCATGCAGACACAGATCTCCCCAGGAAAACACACTAGGAGGATTGTCAGCATCGCTGTAGGAACAGGTGCCAGTTTGTTCTGGGGAAACCCCATCGATGCCCCCGCTTGTGATGAGGACGAGCGCCAACAGCCAGAGTGGCACACGGACAGGGGGCCTGGCACCACCGATGGTAGCAGGTCCTCCTCTGGTCGGAGTTCTGGCAGTGCCAGCCTCACCCACAGCAGGCACATGAATGGCACGGAAGACGAGAGTGGGTGTAGTGAGGGACATGTGAAAAGCACACCCTTCAACCAGTCAATGCACGGCCAAGTGAACAGCCGTCTCCAGGGTACAGTGAACGAGGAGGGTGAAGATGAGGAGGAACAGGACAGGCGGACCTCATACCCACGGCAGAAGAAACACCTTGTCCCTCTGTCAGTCCCAGCAGTCCCCAGAGAGCAGCCGCCAGGAGGGAAGGATCAGGTGCTCCACGCCACACTGCGCCAGCTGCAGCAGCTAGGGGTCCATGTGGATGTAGACTCTGCTGACTCGGGAGGCAAGGTCACACGCAGCTCAATGGAGAGTGCCAGTACCCTGGCCGGCATCAACCCAGAGGCAGTCATCAGCAGACTGACCCTCCTGGAGTCCACGGGAACCAGCATGTGTGGCCCCAGTGGCAGCGTGGACCTCAGTCTGGAGGCCAATGCCATCGCCCTCCGGTACCTCAGCGACCAGCAGCTCTCTAGACTTTCTGTGGgggagtggggtggggtggggggggcaacAGCCCCCTATGGCGCGTTGGCTTcaaaacagcgccccctgtcagacatctagtgtatatataaatctcAGCGGATGGAAACCAAGTTGCAGGcaggattttttggggggtgcaATCATGCCCCCTACTGCTCACATATAGATAGATACACGCACATgcattagttaaataaaggttaaataaaaacaaatgtaaaaaacatGCATGAGTCCTTAGTATATACTTAAtttcaaaattcaaaaggcactcgcacatctgagctatcttttttgcaggtgcatggtaacagttgaacaAGATGAGGAAAAAAGAAGGAACCCGCACACTGCTTGTGAGAATATCAAATCGAatggtattagtcacatgcgccaaatacaaatacaaagtgtagaccttacagtgaaatgcttactcacgagcccctaaccaacaatgcagtttaaagaaatatggatgagaaaaataaa

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0070050 neuron cellular homeostasis biological_process
GO:0051225 spindle assembly biological_process
GO:0010171 body morphogenesis biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16271 lncRNA upstream 17663 15099934 ~ 15100187 (+) True G13774
TU16269 lncRNA upstream 20165 15097473 ~ 15097685 (+) True G13772
TU16266 lncRNA upstream 22674 15094962 ~ 15095176 (+) True G13769
TU16265 lncRNA upstream 23450 15094122 ~ 15094400 (+) True G13768
TU16264 lncRNA upstream 23750 15093836 ~ 15094100 (+) True G13767
TU16309 lncRNA downstream 71562 15197564 ~ 15197840 (+) True G13806
TU16310 lncRNA downstream 72130 15198132 ~ 15198454 (+) True G13807
TU16323 lncRNA downstream 99725 15225727 ~ 15225937 (+) True G13820
TU16326 lncRNA downstream 102629 15228631 ~ 15228879 (+) True G13823
TU16330 lncRNA downstream 104996 15230998 ~ 15231515 (+) True G13827
XM_036948626.1 mRNA upstream 37546 15075184 ~ 15080304 (+) False LOC110487930
XM_021559884.2 mRNA upstream 37546 15075208 ~ 15080304 (+) True LOC110487930
XM_021559962.2 mRNA upstream 38409 15075207 ~ 15079441 (+) False LOC110487930
NM_001160664.2 mRNA upstream 91315 15024419 ~ 15026535 (+) True elav1
XM_021559606.2 mRNA upstream 98758 15016138 ~ 15019092 (+) False LOC110487655
XM_036949018.1 mRNA downstream 4524 15130526 ~ 15157032 (+) False LOC110488062
XM_036948947.1 mRNA downstream 4524 15130526 ~ 15159472 (+) True LOC110488062
XM_036949172.1 mRNA downstream 37314 15163316 ~ 15171413 (+) False LOC110488261
XM_021560454.2 mRNA downstream 40176 15166178 ~ 15171415 (+) True LOC110488261
LOC110529632 mRNA downstream 66647 15192649 ~ 15241166 (+) False LOC110529632
TU16116 other upstream 155847 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 305226 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 417120 14700176 ~ 14700730 (+) True G13391
TU15839 other upstream 437823 14679698 ~ 14680027 (+) True G13381
TU15838 other upstream 438272 14679350 ~ 14679578 (+) True G13380
TU16507 other downstream 333902 15459904 ~ 15467988 (+) True sass6
TU17062 other downstream 569039 15695041 ~ 15715682 (+) True LOC110490510
TU18087 other downstream 1453084 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 1790497 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 1837055 16963057 ~ 16967790 (+) True LOC110492876

Expression Profile