RNA id: TU16310


Basic Information

Item Value
RNA id TU16310
length 323
lncRNA type intronic
GC content 0.53
exon number 1
gene id G13807
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15198132 ~ 15198454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgagatccgggctcttcgctggccatggcagaacactgacattcctgtcttgcaggaaatcacacacaggacgagcagtatggttggtggcattgtcatgctggagggtcaagtcaggatgagcctgcaggaagggtaccacatgagggaggaggatatcttccctgtaacgcacaacgttgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgacacaccgccccagaccatgacggaccctccaactcCGAATCGATCCTGCTCTAGAGCAGTGTGTAtcactcattccttcaacgataaactcGAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16309 lncRNA upstream 292 15197564 ~ 15197840 (+) True G13806
TU16227 lncRNA upstream 23372 15100294 ~ 15174760 (+) True G13740
TU16271 lncRNA upstream 97945 15099934 ~ 15100187 (+) True G13774
TU16269 lncRNA upstream 100447 15097473 ~ 15097685 (+) True G13772
TU16266 lncRNA upstream 102956 15094962 ~ 15095176 (+) True G13769
TU16323 lncRNA downstream 27273 15225727 ~ 15225937 (+) True G13820
TU16326 lncRNA downstream 30177 15228631 ~ 15228879 (+) True G13823
TU16330 lncRNA downstream 32544 15230998 ~ 15231515 (+) True G13827
TU16335 lncRNA downstream 38934 15237388 ~ 15238208 (+) True LOC110529632
TU16336 lncRNA downstream 40118 15238572 ~ 15239615 (+) True G13833
XM_021560454.2 mRNA upstream 26717 15166178 ~ 15171415 (+) True LOC110488261
XM_036949172.1 mRNA upstream 26719 15163316 ~ 15171413 (+) False LOC110488261
XM_036948947.1 mRNA upstream 38660 15130526 ~ 15159472 (+) True LOC110488062
XM_036949018.1 mRNA upstream 41100 15130526 ~ 15157032 (+) False LOC110488062
LOC110529430 mRNA upstream 72130 15117850 ~ 15126002 (+) True LOC110529430
XM_021562052.2 mRNA downstream 226668 15425122 ~ 15432764 (+) False LOC110489303
XM_036950356.1 mRNA downstream 226668 15425122 ~ 15432764 (+) True LOC110489303
XR_005053650.1 mRNA downstream 233055 15431509 ~ 15431641 (+) True LOC118966767
XM_036950487.1 mRNA downstream 234635 15433089 ~ 15437025 (+) False lrrc39
XM_021561923.2 mRNA downstream 249004 15447458 ~ 15468011 (+) False sass6
TU16116 other upstream 236129 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 385508 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 497402 14700176 ~ 14700730 (+) True G13391
TU15839 other upstream 518105 14679698 ~ 14680027 (+) True G13381
TU15838 other upstream 518554 14679350 ~ 14679578 (+) True G13380
TU16507 other downstream 261450 15459904 ~ 15467988 (+) True sass6
TU17062 other downstream 496587 15695041 ~ 15715682 (+) True LOC110490510
TU18087 other downstream 1380632 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 1718045 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 1764603 16963057 ~ 16967790 (+) True LOC110492876

Expression Profile