RNA id: TCONS_00026469


Basic Information

Item Value
RNA id TCONS_00026469
length 3222
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_013399
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20859661 ~ 20869175 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTCGAATGAGGGAACCGTTTGAAAGCGAGAAGCTCCAGCTGCAAGAGCTCAACCAAAGACTCAGCCACTACCTAATGCGCTCGAAACAGTTGGAACAAGAAAACACCTGTCTGATTAACGAAATAAGCTCAATCAGGCAGAACAGGTCTGGAGAATGGGAAAGCAAGCACATGTCCGAGCTGCGAGAAATGAGGAGACTGGTGGAGCGTTTATCTTTCGAGAAATGCAAAGCGGAGATGGAGCGACAGAAGCTGCGCAATGAACTTCAGGCGCTGCAGGCGATGCGTTCAGATGAAGCCTCGGTCAGCAAAAGCATCGGGACTGAGCTTAAAGGCTGCGAGAGGCAACTTCAGAACGCTATTCAGGGCAACGGTGCTTTGGAGAGTCGTCTCTTTGAGCTGGAAACGGAATACAAGTTTTTGGAAGATGCCCACAGAAAGGAAGTGGCCCACCTGAGGGACCAGGTGCGCTCCAGAACTGTGCGAGTCGTGACTCAAACGCGTCCCGCTCCTCCAGCGGTTACTATGGAGGAGGTGCAGGAGTACGCAAACAACTTCACCGAAAACTGGCAGGGCACCTTGGAGATGTACCGCCTGCAGGTGGAGGAAATCGAAGAGTCGATAAAAGCAGACCACGCGAGGCTGGAGGAGATTCAGAGGGAAAAGAAGGAACACGCTTCGCAGTTCAAGAGGCTGCGTGACGAGATTGAGAAACAAACACAAGTGCAGATGAATCTCGAGGAGCAGCTCGTGAACATGCAAGATCAGTTCAGAGCTGAAATCACTCAGTATCAGGCTATTATTGAGGAACTAGAGTATGAGCGCAGAATGCTGTCCAGCAACATCTCAGATAAGCTGAAGGACCATCAAGATCTATTACAGGTCAAGATGGGTCTCGCTCTGGAAGTGGCAGCATACAGGGCGCTCTTGGAAGAAGAAGGAAGACATGCTAAAATGTGGTCTAATCAGCATTCAAGAGAAAGAATTATAGATATTAAAACACCAGCCCATGTTTACACTCCAAGAGTCTCTGTTAATTCTGCAAGTCGGCCGGATACAAGAAAAAAAGCCTTCACAGGATATGATGTTAAATATATGGAGCCTGTTTCCAGCATGAGATCCTCATCAACATCCAGTCAGTTTCATTCTTACGAACCCTCTAGGATTGTGCCCATCAGTGTATCAAATCGTGCCCAGCAGAGTCCTGATTCTAGAAGGGACATGATTTCATTCACCAAAGCAGCTCAAGCAGCTGCTTCCGGTACCTCAAAACCTGGAGTTTCTTCTGTAGAGGTAAAAAGAGAGGAGATAGATCAGAGATATCTGAGAAAAGAGGTCTCTCAGCACCCTTCAAAAAGCTCACCTGATCTTCCCCCCACTAGAATCGAAAGTACACCAAGCTCAACCATGTCAAAAATAGAGAAACCAAAGTCAGTGAATGTAATATCACCTACTGTGAGCTTGAGCAAGACCATCACAGAAGAAAGCCGAGAGAAAGATGTTAaactgaaagaaaagaaaatggatttCAAACTAGATCAAGACAAATCTGAGGCATCAATAAAAGATAAAAGAGGGGATGTGAAAGAATCAATCGCCAAAGATGTGAGAGAGTCTGAACATGTGGGGCATAAGGTATTTGTAGGTGAGGAGAAAATGTTAGATGCTGTTTCTATGGAGGAAATCATTCAGAAGGTCATGAAACCAGCCGGTTTAGATCCTAAGGTCAGCTCATCCCCTGACTCAAAGGTCACATATCACGTAGAGAAAACAGAACAAGAGGATGGAACCACCAAGACTCAGATTGTCTTACAATCGAAAGTTGAGGAGGAGCTGGACCTGTCTGAAGATTCTGCCCTAGAGGAGCTTCTCAGCCAGGGAGTCAAGAAGGTCACTCTGGAGAACATCAAAGGAACCCCAACGGGAGCCATGATTGAGAACCTGTTGAGTCTTGGCCTGCAAGGTGAGAGTTTGGAAAATAAGTTGGTGAATGTGGAGGTAATCGAGGAACCGGTGGATTCTCAGAGTGATGAGGAGAGTGAAATTGAAATAGAGGAGACTGTGGAGATTAAGTCTAAACAGCCAAGCATCAGTCCCTCATCAATGTCCTTCCAAATCGAGGAGCTAGAGAGTGACCCTAAGACCACAAAACCCTACGAGACTGATTTTGCTAAATCCTCACGTTATGGGAACAGTGGGTCTATGCAGTTTCAGGATGTTTCCAAAGAAGAAAGTCTACCCTACTTCTCACATGGTAAAGACTCACAAGAATACTTCGTCTCCACTCCTGACGAGAACCTGTCAGAGTCCGAGGAAAAAGACAATGAGTCGGAGGATGGCGGAAGGTTTATGTCATATAGCCATTACGGAGTTGTGGATGATCTGTCTGATGAAAGATATTACCAGGAAGATGATCCAAAACGACCCACTGCTGAAGGTCACAGTTACAGAGACTCACCTGATTATGGTGACCGCTCGTTTCTGAGAGACAATATCCAAGACTGCATAATTGAAGAGGAGGTGCACGTTTCTCCCACTCTGCAACAGTCCATAGTGGGGATCCTGAGAGAGGACTCACTAGACCCCGAACAGCAGCTCAGAGGAGCATTAGAGCAAATCCAAGACACTGTTTCTGGAGCCCTCAAGGAAGAGCTGGCATTTTTCACGAAAGGTAGAGAGACTCCAGAGAATGTCTCGGTGGACATCAAAAAAATAGAACAAGTTGCAGACAATGGAACCATGACTATTGTGGCGGAGCTCAATGTGTCCCAGACGTTGGAGGAGTCTGGACTGCTGGAAGAAGCAGAAGATGATCCATCTGAAGAGCAGATCATGGCGGCGCTGAGCTCATCTCATCCAATGCTCCAGCAGGCCATAGGTGGAGCTGCCGGTACAGGATACACCATGAAAATTTCCAAAGAGGAGTTTGAAACGGACGAAGTGCCATGGATGACCACCGATGAAGAGTTCCAACAGTGGAGCTCAACCGATGGGTTTGGCAAGACAGAAAAACACATCAAGCTCGGCCCTACTGAGAGATCTTTTACTTTTCAGATGGATGTGAACAACGGCTCTACTGCATCAGTGAGTGAAGGAGCCATCGAAGTGCAAAGCAGCTCTTCTGAATTCTCACAGACTCAGATGATTGAGCCACACTTAAAGGTCTGTCATGAGAAAAGAGTCGCAACTGTTTATCTTGAAAGCCCCAAAGATGAGTAA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-81 Predicted to be located in intermediate filament. Orthologous to human SYNM (synemin).

Ensembl:

ensembl_id ENSDART00000090079

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026461 lncRNA downstream 251424 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 539788 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA downstream 539866 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00027294 lncRNA downstream 710564 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027293 lncRNA downstream 975367 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026963 lncRNA upstream 295651 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA upstream 295651 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026498 lncRNA upstream 1063078 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 1075030 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 1681420 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00026466 mRNA downstream 37616 20726149 ~ 20822045 (-) False XLOC_013397
TCONS_00026467 mRNA downstream 43558 20730053 ~ 20816103 (-) True XLOC_013397
TCONS_00026465 mRNA downstream 185540 20642378 ~ 20674121 (-) True XLOC_013396
TCONS_00026463 mRNA downstream 223112 20613241 ~ 20636549 (-) True XLOC_013394
TCONS_00026458 mRNA downstream 251361 20581685 ~ 20608300 (-) False XLOC_013393
TCONS_00026470 mRNA upstream 12287 20881462 ~ 21047580 (-) False XLOC_013400
TCONS_00026471 mRNA upstream 13558 20882733 ~ 21047007 (-) False XLOC_013400
TCONS_00026473 mRNA upstream 208353 21077528 ~ 21097663 (-) True XLOC_013401
TCONS_00026474 mRNA upstream 232660 21101835 ~ 21105968 (-) True XLOC_013402
TCONS_00026475 mRNA upstream 295416 21164591 ~ 21170264 (-) False XLOC_013403
TCONS_00026468 other downstream 13348 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 225738 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 265419 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026456 other downstream 299671 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026448 other downstream 1317430 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026472 other upstream 151736 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026485 other upstream 843121 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026501 other upstream 1214597 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 1681420 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026513 other upstream 1870557 22739732 ~ 22743366 (-) False XLOC_013426

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_03715150_03721616.mRNA True 3328 mRNA 0.45 5 CI01000013 3715150 ~ 3721731 (+)