RNA id: TU27448


Basic Information

Item Value
RNA id TU27448
length 404
lncRNA type intronic
GC content 0.44
exon number 1
gene id G23808
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23853285 ~ 23853688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccctgagtcaatactttgtagaagcacctttggtggtgattacagctttgagtcttggGTGTGTCTGTATACGTTttacacatctggatttggggattttcttcaattattccttgcagattttctcaagctctgttaagttagatggggagtggcggtgaacagcaatcttcaagtctttccactgATTTTCAACAGGATTCAAGTATGGGCTTTGGTTGGGtgactcaaggactttcacattcttgttctgaagccattccagtgttgcgttggctgtatgcttggggtcattgtcctgttggaacgcaAATCTTCACCCTCCCAGTTTAAggtcgtttgcactctgaagcatgCTCTCATCAAGGATGTACCtgtaaagtgcattcggaaagtattcgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27445 lncRNA downstream 6674 23846361 ~ 23846611 (-) True G23805
TU27444 lncRNA downstream 7105 23845959 ~ 23846180 (-) True G23804
TU27441 lncRNA downstream 10485 23842233 ~ 23842800 (-) True G23801
TU27439 lncRNA downstream 13754 23839234 ~ 23839531 (-) True G23799
TU27436 lncRNA downstream 21940 23831142 ~ 23831345 (-) True G23796
TU27476 lncRNA upstream 47982 23901670 ~ 23905158 (-) True G23830
TU27477 lncRNA upstream 53209 23906897 ~ 23907116 (-) True G23831
TU27478 lncRNA upstream 54569 23908257 ~ 23908561 (-) True G23832
TU27479 lncRNA upstream 55224 23908912 ~ 23909237 (-) True G23833
TU27484 lncRNA upstream 59194 23912882 ~ 23913107 (-) True G23838
XM_021592107.2 mRNA downstream 78420 23769293 ~ 23774865 (-) True LOC110510928
XM_021591923.2 mRNA downstream 233510 23321071 ~ 23619775 (-) False LOC110510575
XM_021592530.2 mRNA upstream 88207 23941895 ~ 23945943 (-) True LOC110511707
XM_021592581.2 mRNA upstream 127527 23981215 ~ 24015777 (-) True LOC110511826
XM_021592720.2 mRNA upstream 180537 24034225 ~ 24047501 (-) False LOC110512077
XM_036972886.1 mRNA upstream 180537 24034225 ~ 24049430 (-) False LOC110512077
XM_021592683.2 mRNA upstream 180537 24034225 ~ 24049433 (-) True LOC110512077
TU27396 other downstream 26794 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 228936 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1009980 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1471077 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 2305512 21535933 ~ 21547773 (-) True LOC110507736
TU28304 other upstream 369219 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 698903 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 1010399 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 1074660 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 1091220 24944908 ~ 24951387 (-) False LOC110518671

Expression Profile