RNA id: TU28762


Basic Information

Item Value
RNA id TU28762
length 4582
RNA type TUCP
GC content 0.47
exon number 2
gene id LOC110518671
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24944908 ~ 24972465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcacaaagttcaagggggccgaatactttcgcaaggcactgtacatcgaCCACTTCATCCTGGAACGCTTCGccaccctctccttcaccccaGGCTTCCTGAGTGATGTCTGGCTGCCCAAGCTCCTACCTGGCCAGCAGGCAGGTCCAGCATGAGAATGAGCAGGCTCTGCTCCAGGCTTCTCTCCAGTGGCTGAGCCACACGCCAGACCGCCCTGAACACGCCTGCCAGCTCCTCTCCCACATCCGCGTCCTCACTGCTGTATGGGCTCTGCTGCCCCTGGAGGCCAGCTGTGAGGTGCTGGTGGAGGAGGCTCTGGACTACCACACAATGGCCAGTGCCTAACCAGTTTTGCAGACAGGTGGCAGGGAGGGGAGGAGCAGTTCCTACTTGTGGGTGTTGAGGTGTCAGAGCCTGGGGGAGGAGCTGATTGCAGATGTTCGCTGGCTAGATTTAGACTCTGGTGGGTGGATGGTGGAGATCCAGATCCCAGCCCAGAGGAGCCACCACCGTGTCACTGTACTGGGGGATTTCATCATGCAACTCATCACAAGTTAATGGAGGTGATGCTGCCAGGAACCTGCTGTACTGCTACAAACCCAGAGACAACCAGTTGATCAAGGTAAAGCTCTGCTCTTACACTGCAACCCAACCTAACATTTCCAAAATGACTCCAATTATGTTTAATCTCTTCTCTAGAGTGCCCCAATGAACCAGTGATGTGTGGATTTCTACCTGGGAGCCATTGGGGAGTGTCTGATTGCTGTTGGAGGGCGTAATAATAACGGGCTCTGTTGTCAGTGGAGATTTTCACCCCTACAGACGACTGCTGTACATATGTAGCAGGACAGCCCAGGGGAGAATTCAACTCACCCTGATTCACAGTCACACTACTCCTCAATGGTCTCCCAAAGCGTCACCTGTACTCCTGTCTCTGACATTACTTCCCCCTGTTAAGCAGCAAGACAACAGAGTAAGGAGAACAACACTCTGCCTAAGGGGTAGCTCTCTGTTGTCACGGTTCCCAATACACATACTATAACTATTGTGCCTCTTTGCCTGGCAGGCTGGCACAACTCACATTAAAGTCCTTTCTCTCACTTGTCCCTTTCTACTCCATTTCTCTGCAGATTCACCTATGGCAATGCAGGCACATCTCATAAAGGATTGGTCTACATCTCAGGAGGCCATATCTACCAGATCGGGCCGTACCGGCGAGTCGTTTTTGAGCTATGACCCCAGAGGAGGAGACGTCTGGGTGGAGCGCCAGGCCATGTCATCTGCACGGGGGTGGCACTGCATGACGTCACTTCACCACCTCATCTATGTAATCGGGGGCAGCAATGACCACGAGGAGAGCATTGAGTGCTTTGACATCCTGGTGGTGGAGGCCTTTGACCCCCAGAGTGAACAATGGATCTGTATAGCCCCCCTCCTCCAGCCTAACAGTGAGGCGGTCTGTGGGGGTAAGATctttaacaaaatatatatttgacccttattttaccaggtaagttaactgagaacacattctcatttacagcaacgtgctggggaatagttacaggggagaggaggggggatgaacgAGACAATCTACGTGCTGGGGGGCTACAGCTGTGAGAGCATGGTTTTCTCACAGGTCACACAGGGGTTTGACCCTGAAAATGCCAGTGGGTGCAGGACCCAGACCTTTCCAAAAACATTACAGGCAGGGGAAAAGAGCTGTGTAGCTGCCAATGGAACACAGTGGATGACAGAACTACCTATATCATATCATCTCTAAAAGCACAAAACCTCACAAAAGGACTAGTTCTGTTTCAGCTAATTTGTGAAGACTTCCAACATGCTTAACATTGGGGACTATGTGAAAAAGTTTTACTTTGATGTGCTTCGTATTACAATTGAAGCataatctatactgaacaaaaatgtaaatgcacatgtaacaatttcaaggattttactgagttagagttCATAGAAAGAAAtaagtaaattgaaataaattcattaggccctaatctatggatttcaaatgattggcaggggcacagccatgggtgggcctgggagggcataggcccacccacttgggagccaggtccacccactggagggccaggcccagctaatcagaatgagtttttccccacaaaagggctttatgacAGGcaaaaatactcctcagcaccccccttccccctcctcagacgctcccgcaggtgaagaagctggatgtgggggtcctgggctggtgtagttacacgtggtctgcagttgtgaggccagttggatgtactgccaagtTCTATAAAAATGATGTTGGTCGAGGAAGGataagtgcacctgtgtaatcagCTTCAGAGCAAcacttttttaaaattatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcgatgacggcctaggaacagtgggttaattgccttgttcaggggcagaacaacagatttttaccttgtcagctcggggattcgagccactaggctacctgctgccactttgtgtttatattttggttcagtatatgTGTTTTAAACTAAACGTTTTGTTTGAGTTATGATGATAAGAAAAAATATGGCATCCCTTCAGAATCAGGCAGACAGGGCACAGTGTTGGCACAGAGGGCATACTGTATATCTATTCAAATCATGTCAACAAAAAACTATAGCATCCATCCATACCTTCAGCGCCACATTTCTATTTATCATCACAATTTCACATTATAGGTAAACAATAAACACTGATTGAAGACCATTTGCAGGCCAATGTTGAGGAGGTGGATAGTAATCTGGCCTTATTTTCAGGTTGAGAAACAGTTATCTTATTCTCCCAAGTGACTTCTCTGTCTCTTGTCTCTGATCCCCAGGGACTCTCATTCAAAGGGGTAGTATGGATGAGACTTCAAGCTGAAGAACAGAAACATGTCAGGGTAGGAGCAGTTGTTCTCTACATGGtattattgatgtattaagtATTTGATTAAGGAAGCGTTGAACCTGTCTTACGAGTCGATGATGCAGCTCTTCCAGCCTCTATTCAGTCCTCTCAGTGCCGACATGTCCTCCTCAGTCAGAGAGAAGTCAAAGATTAGTGTTTTCCAGAATGTGATTGGGTTTCACACTTTTGGGGATCACTGCAATACCCTGCTGCACATGGTACCTCAGCAgtacctgaaacacacacacatggtccttagatgcagagcccagatgcacacacacacactagatgtgTGTTTCTACTGAACTATCTAGTCTAACCTGAGCAGGGCTCCGTCGGTGCTTCTTAGCCACGTCTCCTACCACAGGGTCTTCCAGCAGCTTCTCAGGATCAGTGTCTCCACAGTGACTGTAGGAAGTATTGACACAGTCAACTTTTGGAACATAGGGAGGGATGTTTACTCGGCCAACCGTGGGGTCAATAGTGCAGAACAGAGCAATATAGTGCAGGATCATAGTCCAGTCGCTAATGTCTACATGTTATTGTCAGGAGGACTCACAATTCTTTGGGTCTTCCAGGGGAACCTAAGGGGCTGTAGGCAGTGAGGGTGATGTTGCGAGACTTGCAGAACTCCACCAGGTCAGACTGGACCAGGTAGGGATGCAGCTCCACCTGCaggagcggagggagagagataatgagattACAGAGTTGTAAGAACGCTCTTTCGGCTGTTATCCATTCTTGTCTACTACCCTCTGACCCAGTAGCGACACCCACACACTCTTTCAGAATGGTAAACACACCCGTTTGCACATGTAGTGTCCATGCATAAACACAGTTAACTGTGTATTGCACTGGTTGAGCTGGTTAAAGGAGTGAAATATGTTTgtgacacaggaggttggtggcacattaATTGGGGAGTACGGGCTCATAGTACTGGCTGGAATGaaatgaatggaatggtatcgaattcatcaaacacattccatgaactccattccagccattattatgagctgtcctcccctcagtagcctccTGTGGTTTGTGAGGTACTCAGGGTTTCATAATAGTGTATTTGAAATAGCTAAAGTTGCAGTGTAAAGCCTTGAAGAACCTGGTTGACTGCAGGGGGAACCTTGGCCACAGAGAGCAGTCTCTCCAGCTGGAGGACGTTGAAGTTGGACACGCCAATGCTCTTCACTTTCCCTGAGGCCTGCAAGGCCTCCATCCCCTACATCACATAGCAGACATTACAGCACAGGCACAGTAATACACCACACTTCAAGATACCAAAAATAGACCacgaaaaaatacaaataattttgTTGTTAGGAGACAGTATAATGATGTTGATGAAGAGGAGATGATAGTGTTTTAACCTTCCACACGTCCACATAGTCAATGTCagtggtgagcatttctccatctCTCATAGGGAAGAGCTCATCATCCACTTTCTGGAAGGAATGAaaaagatacagtgcattcggaaagtattcagaccccttgactttttccacattttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28788 lncRNA downstream 6207 24911449 ~ 24938701 (-) False LOC118956210
TU28787 lncRNA downstream 6207 24928348 ~ 24938701 (-) False LOC118956210
TU28790 lncRNA downstream 6207 24928348 ~ 24938701 (-) False LOC118956210
TU28791 lncRNA downstream 6207 24928348 ~ 24938701 (-) False LOC118956210
TU28792 lncRNA downstream 6207 24928348 ~ 24938701 (-) False LOC118956210
TU28827 lncRNA upstream 8629 24960016 ~ 24965492 (-) True G24985
TU28777 lncRNA upstream 47159 24998546 ~ 24999010 (-) True G24959
TU28757 lncRNA upstream 90173 25041560 ~ 25042769 (-) True G24945
TU28765 lncRNA upstream 91516 25042903 ~ 25044176 (-) True G24948
TU28853 lncRNA upstream 114503 25065890 ~ 25066926 (-) True G25011
LOC118956210 mRNA downstream 32213 24910984 ~ 24912695 (-) False LOC118956210
XM_021595703.2 mRNA downstream 39264 24898911 ~ 24905644 (-) True LOC110517792
XM_021595392.2 mRNA downstream 79750 24853824 ~ 24865158 (-) False znf276
XR_002472482.2 mRNA downstream 125665 24808572 ~ 24819243 (-) True cdk10
XM_021595131.2 mRNA downstream 125669 24808572 ~ 24819239 (-) False cdk10
XR_005046131.1 mRNA upstream 60794 25012181 ~ 25020388 (-) True LOC118956655
XM_036974229.1 mRNA upstream 93058 25044445 ~ 25083238 (-) True LOC110519016
XM_021596479.2 mRNA upstream 137909 25089296 ~ 25108874 (-) False LOC110519226
XM_036974277.1 mRNA upstream 137910 25089297 ~ 25112229 (-) False LOC110519226
XM_036974279.1 mRNA upstream 137910 25089297 ~ 25112229 (-) False LOC110519226
TU28795 other downstream 6207 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 80074 24864087 ~ 24864834 (-) True znf276
TU28501 other downstream 391346 24552591 ~ 24553562 (-) True LOC110514811
TU28304 other downstream 718418 24222907 ~ 24226490 (-) True G24542
TU27396 other downstream 1118417 23822700 ~ 23826491 (-) True LOC110511130
TU28960 other upstream 329205 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 330217 25281604 ~ 25282018 (-) True G25117
TU32221 other upstream 2684701 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 3106056 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 3106056 28057443 ~ 28066305 (-) True G28870

Expression Profile