RNA id: TU28962


Basic Information

Item Value
RNA id TU28962
length 415
RNA type TUCP
GC content 0.50
exon number 1
gene id G25117
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25281604 ~ 25282018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGAATATTCACGCATATTCTCACTCGATCCTTGGTCTGCTATGAGTAAGAGCTAAAGGAATGTATTGTGACAGGTCTCACCACTATGTGTCCGCATGTGGATCTCCAGGGAGCTGGCGCTCGGGCAGCTCTTGTTGCATTGTGGGAAGGGACAGACACGTTCGTTGGGGTAGGACTCCTTGGCTTTGTCcagtgggggggaggaggaggcctGCTGCTTCTGCCGGCTGGCACAGTAGTACATGAGGTGGGCCTGGAGGTTCCTCTCACTGCGGTACCAGATCCCACAGTCCTTACACGGGAAGATGTCCTCTGGACcaatcaaacacaaacacaactgTAAACTCTATCCCTACAACAACCAATCATTTATCAAATCTGTCATACATAATTAAAAACAATGCAAGAAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28959 lncRNA downstream 2917 25278465 ~ 25278687 (-) True G25114
TU28955 lncRNA downstream 7835 25273542 ~ 25273769 (-) True G25110
TU28884 lncRNA downstream 102931 25178355 ~ 25178673 (-) True G25042
TU28882 lncRNA downstream 104856 25176513 ~ 25176748 (-) True G25040
TU28879 lncRNA downstream 112088 25169281 ~ 25169516 (-) True G25037
TU28963 lncRNA upstream 107 25282125 ~ 25282666 (-) True G25118
TU28965 lncRNA upstream 1505 25283523 ~ 25287060 (-) True G25120
TU28964 lncRNA upstream 5469 25287487 ~ 25288484 (-) True G25119
TU28978 lncRNA upstream 13047 25295065 ~ 25295323 (-) True G25130
TU28979 lncRNA upstream 13325 25295343 ~ 25295645 (-) True G25131
XM_021596750.2 mRNA downstream 109018 25154725 ~ 25172586 (-) False kiaa0513
XM_021596711.2 mRNA downstream 109053 25154725 ~ 25172551 (-) False kiaa0513
XM_021596861.2 mRNA upstream 90812 25372830 ~ 25381856 (-) False LOC110519951
LOC118959932 mRNA upstream 177724 25459742 ~ 25463093 (-) True LOC118959932
XM_036974449.1 mRNA upstream 191518 25473536 ~ 25485212 (-) True LOC110520001
XM_021596965.2 mRNA upstream 255097 25537115 ~ 25566593 (-) True LOC110520008
XM_021596976.2 mRNA upstream 397891 25679909 ~ 25712438 (-) True LOC110520015
TU28960 other downstream 574 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 330217 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 342903 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 416770 24864087 ~ 24864834 (-) True znf276
TU28501 other downstream 728042 24552591 ~ 24553562 (-) True LOC110514811
TU32221 other upstream 2354070 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 2775425 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 2775425 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 3421869 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 3998258 29280276 ~ 29280700 (-) True G29906

Expression Profile