RNA id: TU28978



Basic Information


Item Value
RNA id TU28978
length 259
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G25130
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25295065 ~ 25295323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccatgctttccacctggctaccccataCCCTGGCCAAAATCTCagtacctctacgcagacgacaacattctgtatacatctggcccttctttggacactgtgctaacaaacctccaaacgagcttcaacgccatacaacactccttccgtggcctccaactgcttttaaatgctagtaaaactaagtgcatgttcttcaaccaattgctgcccgcaccctcccgcccgactagcatctccaatccaaaatgaaatttag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28964 lncRNA downstream 6581 25287487 ~ 25288484 (-) True G25119
TU28965 lncRNA downstream 8005 25283523 ~ 25287060 (-) True G25120
TU28963 lncRNA downstream 12399 25282125 ~ 25282666 (-) True G25118
TU28959 lncRNA downstream 16378 25278465 ~ 25278687 (-) True G25114
TU28955 lncRNA downstream 21296 25273542 ~ 25273769 (-) True G25110
TU28979 lncRNA upstream 20 25295343 ~ 25295645 (-) True G25131
TU28980 lncRNA upstream 509 25295832 ~ 25296087 (-) True G25132
TU28993 lncRNA upstream 13394 25308717 ~ 25309109 (-) True G25145
TU28996 lncRNA upstream 15713 25311036 ~ 25311372 (-) True G25148
TU29003 lncRNA upstream 23517 25318840 ~ 25319137 (-) True G25155
XM_021596750.2 mRNA downstream 122479 25154725 ~ 25172586 (-) False kiaa0513
XM_021596711.2 mRNA downstream 122514 25154725 ~ 25172551 (-) False kiaa0513
XM_021596861.2 mRNA upstream 77507 25372830 ~ 25381856 (-) False LOC110519951
LOC118959932 mRNA upstream 164419 25459742 ~ 25463093 (-) True LOC118959932
XM_036974449.1 mRNA upstream 178213 25473536 ~ 25485212 (-) True LOC110520001
XM_021596965.2 mRNA upstream 241792 25537115 ~ 25566593 (-) True LOC110520008
XM_021596976.2 mRNA upstream 384586 25679909 ~ 25712438 (-) True LOC110520015
TU28962 other downstream 13047 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 14035 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 343678 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 356364 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 430231 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 2340765 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 2762120 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 2762120 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 3408564 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 3984953 29280276 ~ 29280700 (-) True G29906

Expression Profile