RNA id: TU28792


Basic Information

Item Value
RNA id TU28792
length 7564
lncRNA type antisense_over
GC content 0.42
exon number 5
gene id LOC118956210
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24910984 ~ 24938701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATAGCtttaatttggtttaaataacttTTTATATGAacttgaaaaaaacaaaaaaacattcaatATTACATCAACATAACAAATAGATTATATACATAGGAAAAGTGTTGGTTAAGCATGCAATATATCAGAATGTATACTGAGTGTTATCATAATTCTAACACATGCAAGAAAGAGTATGTAACGCTGACTATGGAAAGCACTGTAGATCATCTTATCCATGCTGGTGCTTCAGTTCCATCTGTTTCAATGGTGGGATCAACCCAACCATGAACCCCATCATGGTTTGAGGAATGGGGAGGACCCCCGGTCCCTGGTTCTATACGCCCAATGGTGTTCTGGTCAACCCAACATATAGAATAACATTAAGAATTCAAATAGTTAGACAAGGTAAGGTTAACATAAGATGGACATACAAAATATAAATATCAGGTCTGCTCATAAGTTGGGGTACCAAAGATGGACCACTACCAATGACATTGCAAAAACCTTTGTTCCCGCGGTGCAACACGATATTTTAacccatcttctctctcctcctcttccctaatttattttattttcctctCACCCTTTTCCCATTCTCTTTTTTTCACATTTACTTTTGTCACATTCTGTGCCCATACTCTttggtctccccctctctcaggcTGTGTCTCTCATTATTGGTCTAGCTCGTTGCTGTCTTGGCTGCAGGTTCTGTAGTGGCGCTGGCAGAACTCCCGAATCCGTGTACACGCCTCCACCATCATCTCCTCTGGTACGGTCACCACGATCCGGAAGTAATTTGGGTACTCAAATGCCTGCAGGGAGAAGAGAATTGTAAACAACAAAACAAGGTAATTTCTCTTCCCGTGGTAGACAGAGAGGATGGATGAGTCCattagatggatggatagatagataacaacatgtaaactatatttagtctccaaatgTATATTGAAAACATCAATATATTTGCACAATGAgctcttgttgtctctcaaatacatcgttacagttattggttagctagctagtgaatcagtcaaaacaccttaAAACAAGAAATGGTATCAAAAACAAGATCAaactagctgaaacgagccacctacgattccctACATGGTAGCTTCTTGTCATTTCCTTACAAAAACAGattgcagttagagtgcagtatgtttcaaatactgcgtccaaaataccacagtgcAGTTATTCTGGAATTACTGCGTTTAAAATACCACAGTGCAGTTATTCTGGAATTACTGCGTTTAAAATACCACAATCGACTGCAGTTAcagcacttttactgcagtttcaaatcTGCAATCTTTTTTGTCAGGGTGTTGAATCATAACAAATCATGGCTTCCACTCACATCGATAGGCATGCATAATTTTCTTGACacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagatgtgtgtGTCTGGCGTTTTACCGTAGCGGGCAGGCAGAAGACGGACTGCTCAGTTACCAGACGCTCAGTGAACTGCACATCGTTCTGGAACTCTGGGAAGTGTTCCATCTCAATTCCCACCTAGAAATACCAAGACACACATTAAGTAACCTACTAAGCATTTAACGACAGCAACGCCTTTTTTGGTCCTGTCCGGCCGCCTTGATTTCAACGTCCCCAGACAACCTATAATTTGTTAAAATTTGGTCTGGTCCAGACCGGATTTGATTTGCCCAAACATTAGCATAATACCCAGCATGCTTTGCATgtgtttgtttttacatttacattttggtcatttagaaGATGGtcttatccagagggacttacagtcagtgcattcaactaaggtagataaacatatcacagtcatagcaagaaaataaaaaataagtaaCTGTTACTGAGAATGTTATTGTTGTTGAAGTGGTCTTTTCGTTTGTTCTGTAGGTTGGATTAGTTTGAACATCATTGCTTCCCGTTTTAAAGGTTTGAAAAAGCTATCATAAGTGCATGTGACAGAAGGGCGTAAGAATAAAATATTCTGTTGCAATCTTCAATTGTTTCCTCTTTCCTGTCTTAAGGCTTGAAAAAGTATTATTGTGATCTAATGCTTACGTCATTGAGAATGTCCATATGTGCAGTTGAAATTTGGTTATAGAATCAATAAACgaaaaatacatacagttgaattcggaagtttacatacacttaggttggagttattaaaactcggttttcaaccactccacaaatttcttgttgacaaactatagttttggcaagtcggttaggacatctgctctCTGCATAACacaggtcatttttccaacaattgtttacagacagattatttaatttataattcactgtatcacaattccagtgggtcagaagtttacaaacactaagttgactgtgcctttaacagtttggaaaattccagaaaattatgtcatggctttagacGGTTCTGATAGACTAACTGACATTACTTggggtcaattggaggtgcacctgtggacgtatttcaaggcctaccttcaaacccagtgcctctttgcttgacatcatgggaaaatccaaataaatcagccaagacctcagaaaacaaattgtagacctccacaagtctggttcatccttggaagcaatttccaaacgcctgaaggtaccacgttcatctgtacaaacaatagtatgcaagtataaacaccttgggaccacgcagccgtcataccactcaggaaggagacgcgttctgtctcctagagatgaacgtacttttgtgcgaaaagtgcaggaaacaggtgcaaaattatctatatccacagtaaaacgagtcttatatcgacataacctgaaagttcggtcagcaaggaagaagccactgctccaaaaccgccataaaaaaagccagactacggtttgcaactgcacatggggacaaagatcggactttttggagaaatgtcctctggtctgacgaaacaaaaatagaactgtttggccataatgaccatcgttatgttcggagaaaaaagggggaggcttgcaagccgaagaatatcatcccaaatgtgaagcacggggttggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatcgatggcatcatgaggtaggaaaattatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcctccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcaaagccttgacctcaaacctatagaactgaaaaagcatgtgcgagcaaggaggcctacaaacctgactcagatacaacagctctgtcaggaggaatggccccaagattcactcaacttattgtgggaagcttgtggaaggcttcccgaaacatttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggagtgtgatgaaagaaataaaagctgaaataaatcattctcactactaatattctgacatttcacattcttaaaataaagtagtgatcctaactgacctaagagataatttttactaggattaaatgtcaggaattgttataaactgagtttaaatgtattaggctaaggtgtatgtaaacttctgacttcaactgtgttttCAACGTCCAGAAAAGCCATGTTTTCGCCTTTTAGTCAGCACATAAAATGCACCTGATTTTAATgttggaaaatatgtattttcagtGTCTGGAAAATACGTTATTTTCCTTATGGGGATCCTGTTCTGTTATCTCCCCACCTACAGACTCTCCACCTACCATTCTGGACACATAAGACTCACCATGAGGTACATGGCTCCTGATGGCATCACGGGGGTCAGCCCAGGAACAGTGGACAGTTCAGAGAAACAGATCTCGGAGTTTGACTGAGAAAGAAGCAGGAAACTAGTCaatagacagtcagtcagacaatcagACAGATATCCAGATAAATCAATATGTTAGACTACTACCATCTGCATTTAAAGTAATTGGGGAAGGTTCAAGGGAGGGGGACTCACCTCGAGGAAACTGATGGTTCTGTGGTAAAACTCCTGGGGCGTGTCGTTCAGGATGCTCTCTATCGCACCCTGGACAATGGTGCAGGCACCCAGAATCCTCTGGCTAAGCTTAACCAGACCCTGACGAATCTGAAAGcagaagagagacagattagGTACATTAGAAGTGATTCCAAACCCCAGAGGACACAGATTAAtcttactgtatgtgtactggTGTAGCGTATGTGTATAGATAAACTGGACTTCACATTCAGTATGCGAGTAGTGAGAGGCTGAAGGACTTACCTCTTTTCCGAAGATTTGATTCTTGTCGTGGATGAGGATCCAACCTAGCCTCCAGCCAGGGACTAGCCATCGTTTGGCCAGACCACCACACGCTAGGATGGGCACATCACTGCTGAGGGACGCCATAGATTGGTATGTGCAACCCGGAAACACCTGATCATGGAGATACAGTACACACTCGCATCAATAAAAAAACATACTGTAGAAGACAATGTAAAATAATCAGGGTTAGTTTAGATTAAAggggaaatgttttaatatattGATTCTATTCATAATACAGAGCATTACACTCAGGGTTGGGCAAATTACTTGAAAAATACACCAAGCAGAATGTGGGCAGTAAAAAAGGAAAACGGTCATTTAAATGTCTGACCCTCCCTTAAAGTAACTGTCTGGTACGATAAAAGATGGAAAGAGACAGATGCGACAGATGCAAGGGAAATATGATTATATTCCATCTAAGTGCTTGGGCAGTGAACAGGGTGGAGCTGTGTTGACTAACCAAAGATGTCCTATTGACACAAAGACCCTGATGTTTCAGTTCCCAGTGAAAGTGGGGATCTGACTTTTTTGGTTAGAATAAGTTTCTGTGGAAAGCAACCAAGGAGAGCAAATGTGGAAGTTTTGTAGATTTCAAATATATTAGAACAGAGCTTCAATTCCTACCTAAAGAAGACTTCTGAGCTGTGTGAATCAGCACAGCTTTCAATGATGTTAACAAATGTGCCATTTCAGTGTTTGAGGCAAACACTTGCAGCCCACATAGTGATTTTAGATCAAGTAAATCTAAATGTATTCAGCTGTTTTTAAGTATGTAACTGTAATCCaatgacatgttttttttaaagaagttaGATAACTTCAGTTGTTCCAAACTCTGACTACAGTACAGTGCAAATATGGTCTTTCTTCATCCATTGAAAAATTAAGCACTTCAACTTAAACAATCAATACAAACAACACCATAAAATACATAAACATGACAAAAAATGTGTATCAATAGTTAAAAATGATTAAACTAATTTGACCATAACAAAGTTTGTGAGGGATTTCATAACTTTATGTATGTATTGTTATGCACTGCTCGTCTAAGACAAAAAGACaaggagatggaaggagaaaaggagagagagagcagagaaaaagAGTGGTGGTATGGTAACCGTAGCAAGCTGGCTTTCATTAGAGCTGAGGCCTTGATGACGGGTGGGAGATCCGCCCCGCGTGCTATTGGTCAGAGCACAATGACTGACAGTTCAGAAAAAGAACATACCAAACCTCACCTCAGATCTAATTTACAAACAGAGCATTTATGGCTCTGCTCTAAGCTCTCAtgagctgtgttttttttttcacagAGAGGAGCCCATAGGGGCCCATAAGGAGAGAGCCTGGCGCTTGCCAAACATTCCCCTTCAACCATGAGATGGAATTGATGCTGCCCAGACACATAATGCCTCCACGCAGCCCCTAAACAGGCACCCTTCCACACAGCCCCTAAACAGGCACCCCTCCACACAGCCCCTAAACAGGCATCCCTCCACACAGCCCCTAAACAGGCACCACTCCACACAGCCCCTAAACAGGCACCACTCCACACAGCCCCTAAACAGGCATCCCTCCACACAGCCCCTAAACAGGCACCACTCCACACAGCCCCTAAACAGGCCTCCCTCCACACAGCCCCTAAACAGGCATCCCTCCACACAGCCCCTAAACAGGCACCACTCCACACAGCCCCTAAACAGGCACCACTCCACACAGCCCCTAAACAGGCACCACTCCACACAGCCCCTAAACAGGCACCTTGTCGTTAAAAAAGGGGCCCTCTCACCCCCACCCACTTCTTCTCCCCGCTCTCGCACTATATTACCCTCACATCTGCATTAATCGCAAACACATGCGGTGAAAAGTGCACAGTCATTCTGAGTACTTCtgttctagtggttagagtgttgggctagtaacttaAAGGGCCTTGTTTTGAGCCAACATtgtgaaaaatctgccgatttgcccttgagcaagacgcttaaccctaatttgctccaggggctctgtactactatggctgactgtaaaaaaaaaaaaacatttcactgcacctatcctcTGTATGTGACAATACAACATATTATTGTATAGTTTTTTGTACTGAGCGAGACTTTGGTGAATTCTGAGCCCATGTGATTTATGCACTCATCGACCCCAATCACCCCCCATAGCGTTCCCAATCACCCCTCCCCCcatagaattttagcaaccaggacaTATCTTCATATTGCTCCtttaaattcatagacagagctattgatgcatttacaatgtttacaaacattggcgtAAAcgagcttatattttgggttccgATGGGCTACGACAGTTgagctaagctcatgaggcatttataagttatgtttttcaagaatcaatgaatatacagtatatcattcatttataagtacAAAAATAGATGTAGCAACTGCGAATTTCCCTTTACGCTATCCAAAAGTCATTCTCAACACAGCTCTCAGAAATGACAGAGCAGAGGAGCGCCTCTTGTCTACAGTTTACCTCTGTGGCTCATTCTTCACTTGCCCTGGCTGACCTAAACCCAGCACTGCTGCCCCGCCACTACCAGCCCCCCATTCAGCCTGTAACACCCCCTAATCACCCCAGTGCTGATGTGGACTTGTCAGACAGGTCTCCTTGGATACTCAGCAGAGCTAAGCCAGAGAAAACCTCCCTGTaactgctatagaatgttaaagAATGTGCCTCGCTGGTATTATGTATTACATGGGGCCTAATGGCcaggatgtaggctataccccaGAAACAGCAGCCCACTCCTGGACGCATGACCAGTTTACTACTGTATTGCACACCTCCATAGACCAATCTTCCTCCATGCCAGAAGACAATCCAATTTAGATTCCTCTCCTTAGTCTCCTATTATGCAATAGACTCAATGCCAGTTTCTGTATTAGTCTGtaggagtgtctgtctctgttgtgtttGTCTCTGAGAGTGCTTCTGTGTTTATGAACTCACCATGTCACCATAGATCTCATCAGCCAGGATTGGGACGCAATGTTTGGAGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28754 lncRNA downstream 30521 24897610 ~ 24897827 (-) True G24942
TU28752 lncRNA downstream 31361 24896772 ~ 24896987 (-) True G24940
TU28725 lncRNA downstream 70802 24857246 ~ 24857546 (-) True G24917
TU28723 lncRNA downstream 72729 24855391 ~ 24855619 (-) True G24915
TU28650 lncRNA downstream 93759 24831392 ~ 24834589 (-) True G24851
TU28821 lncRNA upstream 7979 24946680 ~ 24952340 (-) True G24979
TU28760 lncRNA upstream 9343 24948044 ~ 24972465 (-) True LOC110518671
TU28827 lncRNA upstream 21315 24960016 ~ 24965492 (-) True G24985
TU28777 lncRNA upstream 59845 24998546 ~ 24999010 (-) True G24959
TU28757 lncRNA upstream 102859 25041560 ~ 25042769 (-) True G24945
LOC118956210 mRNA downstream 15653 24910984 ~ 24912695 (-) False LOC118956210
XM_021595703.2 mRNA downstream 22704 24898911 ~ 24905644 (-) True LOC110517792
XM_021595392.2 mRNA downstream 63190 24853824 ~ 24865158 (-) False znf276
XR_002472482.2 mRNA downstream 109105 24808572 ~ 24819243 (-) True cdk10
XM_021595131.2 mRNA downstream 109109 24808572 ~ 24819239 (-) False cdk10
LOC110518671 mRNA upstream 11133 24949834 ~ 24953314 (-) False LOC110518671
XR_005046131.1 mRNA upstream 73480 25012181 ~ 25020388 (-) True LOC118956655
XM_036974229.1 mRNA upstream 105744 25044445 ~ 25083238 (-) True LOC110519016
XM_021596479.2 mRNA upstream 150595 25089296 ~ 25108874 (-) False LOC110519226
XM_036974277.1 mRNA upstream 150596 25089297 ~ 25112229 (-) False LOC110519226
TU28721 other downstream 63514 24864087 ~ 24864834 (-) True znf276
TU28501 other downstream 374786 24552591 ~ 24553562 (-) True LOC110514811
TU28304 other downstream 701858 24222907 ~ 24226490 (-) True G24542
TU27396 other downstream 1101857 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 1303999 23624026 ~ 23624349 (-) True G23394
TU28762 other upstream 6207 24944908 ~ 24951387 (-) False LOC110518671
TU28960 other upstream 341891 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 342903 25281604 ~ 25282018 (-) True G25117
TU32221 other upstream 2697387 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 3118742 28057443 ~ 28062450 (-) False G28870

Expression Profile