RNA id: TCONS_00026547


Basic Information

Item Value
RNA id TCONS_00026547
length 1762
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_013447
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25391171 ~ 25402715 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGCGCGCTGCAGCAGCGAAGGAGACGCGCACGGACAGTCACACTTCACTCTGCAACTGGAGGAGAAAACACCAGCTAAGGATGCGGTCGAAAGCACATACTGGTGAATATCACCCGAAACTTACTTTCTGCAAACtatttagttcatttaaaagGTACTTTCTCTGAAAAAAGCATAGATTGGTGCCTTGCAAATCTGACTAACTCTTTGATTGAGACGAATGTCACCTTGCGAACAGGTGTTTGTTAGATGGGGAACTACCGTTTTCTTTCATCACATCTCTGTGCATTCGAACTTGAAGATCGGGTTTTAGAAGCACATGaaggatgaatgaattaatcaagTTTTTTTATGCATTGAGATGTTCAAACAACTAATTTCAAGGTCATTGGATTTCTTCTAACGGATCATCCCATTGCATCAGCGCTGTAATATAAAGGAGCCTTTCCATTTACTGGAAATCATGAATCGTCTGTGATCCTCACTGTACAGCAGGGTGTCGAGCAAATGCAGCAAACACACGCTTTCGCTCTTCAGTGATGAATGACAGCTCTCCAACATCTGAGAACATCATGTTTCACCAGCTGACTGCAGATACTCTGAATGGCAGTTGTGATTTGCCCACGTGTAACAATAACACAGGTGAAGCGGCATTGCAGCTGCCCACATTTTCCATGGCAGCAAAAGTGAGGGTGATAATTACCTTCACTCTTTGCGCAGTGTCAGCTGTGTGCAACCTCGGCGTGTTGTGGGCTGCCAGCACCAACAACAAGCGCAAGTCCCATGTACGAATTTTAATCATGAACCTCACCGTTGCCGACCTGCTGGTGACTTTCATCGTGATGCCAGTGGATGCAGCTTGGAACATCACAGTTCAGTGGCTGGCGGGAGATCTGGCTTGCAGATTGTTAATGTTTCTGAAGCTCGTGGCTATGTACTCCTGTGCATTTGTGACCGTGGTCATAAGCCTAGACAGACAGTCGGCCATTCTCAACCCTCTGGCCATTAATAAGGCTAAGAAGAAGAACAAAATAATGCTGAGCGTGGCCTGGGCGATGAGTGTTGTTCTCTCCGTCCCTCAGATGTTCCTGTTTCACAATGTGACCATCACGGTGCCAGCCAATTTCACTCAGTGTACCACTCGAGGAAGCTTCGTCAAACACTGGCAGGAAACCATCTACAATATGTTCACATTCATATGCCTCTTTCTGATTCCTCTGGCCATCATGATCTGCTGCTACACAAGGATTCTAGTGGAAATCTCTCGAAGGATGACCAAAGGAAACATCTCTTCAAAGGAAGTCCACTTACGCCGTTCGCACAGCAACATCCCCAAGGCCCGTATGAGGACTTTAAAAATGAGCATAGTTATCGTGACCTCCTTTATAGTTTGCTGGACTCCGTACTACCTGCTGGGTCTCTGGTACTGGTTCCTTCCAGAGGATTTAGAAGAGACCGTTTCTCACTCTCTGACTCACATGCTGTTTATTTTTGGACTGTTTAATGCAATCCTGGATCCCATCACTTACGGCCTCTTCACCATCCACTTTCGCAAAGGACTGAAGCGCTACTGTCGCAGCGCGGTCGTGCTCACCGAGTCAGAGAATAACTCCATCATCACGGGCTCATTGAAATGCTCACCATCCCCATTTCGCATGAAAAGAGTGACCCAGTCGGGCACAGGAACTGACCCAAAGCAGAACACAAGCACGGTGGGTGAGGAAGATAAGAAGGCAGCTGACGGTAAAACTAAAGAATAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016500 protein-hormone receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function
GO:0004968 gonadotropin-releasing hormone receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-76 Enables gonadotropin-releasing hormone receptor activity. Acts upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gonad; heart; intestine; male organism; and nervous system. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 7 with or without anosmia. Orthologous to several human genes including GNRHR2 (gonadotropin releasing hormone receptor 2 (pseudogene)).

Ensembl:

ensembl_id ENSDART00000179852

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027345 lncRNA downstream 165735 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 165784 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA downstream 165784 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00027343 lncRNA downstream 201561 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027342 lncRNA downstream 394101 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00026553 lncRNA upstream 193524 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027346 lncRNA upstream 294560 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026556 lncRNA upstream 357345 25760060 ~ 25762338 (-) True XLOC_013451
TCONS_00026564 lncRNA upstream 893450 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 893450 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00026543 mRNA downstream 111848 25229634 ~ 25279323 (-) False XLOC_013446
TCONS_00026544 mRNA downstream 114239 25245541 ~ 25276932 (-) False XLOC_013446
TCONS_00026545 mRNA downstream 114909 25255677 ~ 25276262 (-) True XLOC_013446
TCONS_00026540 mRNA downstream 213941 25073984 ~ 25177230 (-) True XLOC_013443
TCONS_00026539 mRNA downstream 339325 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026549 mRNA upstream 160577 25563292 ~ 25568994 (-) False XLOC_013449
TCONS_00026551 mRNA upstream 160577 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026550 mRNA upstream 160577 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026552 mRNA upstream 169507 25572222 ~ 25645680 (-) False XLOC_013449
TCONS_00026555 mRNA upstream 352123 25754838 ~ 25771553 (-) False XLOC_013451
TCONS_00026541 other downstream 232394 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 394524 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 830774 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 914288 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026526 other downstream 1074872 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026548 other upstream 113178 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026554 other upstream 352123 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 452295 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 800588 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1477757 26880472 ~ 26894703 (-) False XLOC_013464

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_01220794_01229752.mRNA True 2589 mRNA 0.43 4 CI01000013 1220794 ~ 1230958 (+)