RNA id: TCONS_00026556


Basic Information

Item Value
RNA id TCONS_00026556
length 594
lncRNA type retained_intron
GC content 0.44
exon number 4
gene id XLOC_013451
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25754838 ~ 25771553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAATGAAGTTCTTCCCAGGAAGATGAAACCGATTCGACAGAGTACAATGAATCAGAGCAGTTTTACTAATGAAGAGGACACTCTGGCCCTGGTGAAGTGCTGGGCTGAAAAGTATTTGGACAGCGGTGTTTCCGTTCAGTCAGAAATGGATGCAATGTCAGGTATTGATTATGACAGTGACGACAGCCATCATTCAGTGGAGACAGTGCATCACAGCTATTCCTGTGTCCCTTCTGAACTGGAGGTGTCAGAAGTGAAGCCTGAAGCTTTGAGATCTGTAGCTCGTAGCACAGTTGGCTCCATATCATCCTCACTTCGGCGGCGTTTGTCTGCTTTTCCTGTCAAGCAAAATGAGGAAGATTTACTTGACACACAAGATCTGGCTCCAGTGTACCGTTTGGTGTTGGCTGGAGATGCCGGGTCAGGAAAATCCAGCTTTTTACTGAGGTTGAGTCTTAATGAATTCAGAGGGGATATACAAACCACTCTTGGTGAGAAGATGCAAcaatgccatttttttttcttaagtgtGTTAATGTTACCATATGAATACAGTGTGATAATGGAGAATCTTGCAGGTGTTGATTTTCAA

Function

GO:

id name namespace
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-92 Predicted to enable GTP binding activity; GTPase activity; and calcium ion binding activity. Predicted to be located in perinuclear region of cytoplasm.

Ensembl:

ensembl_id ENSDART00000144043

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027346 lncRNA downstream 14439 25697275 ~ 25745621 (-) True XLOC_013450
TCONS_00026553 lncRNA downstream 114397 25596239 ~ 25645663 (-) True XLOC_013449
TCONS_00027345 lncRNA downstream 534624 25180539 ~ 25225436 (-) True XLOC_013445
TCONS_00027344 lncRNA downstream 534673 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026542 lncRNA downstream 534673 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026564 lncRNA upstream 533827 26296165 ~ 26299776 (-) False XLOC_013456
TCONS_00027347 lncRNA upstream 533827 26296165 ~ 26299843 (-) True XLOC_013456
TCONS_00027348 lncRNA upstream 1292508 27054846 ~ 27066350 (-) True XLOC_013467
TCONS_00027349 lncRNA upstream 1595990 27358328 ~ 27362251 (-) True XLOC_013472
TCONS_00027350 lncRNA upstream 1918963 27681301 ~ 27682853 (-) True XLOC_013474
TCONS_00026551 mRNA downstream 113774 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026550 mRNA downstream 113774 25563292 ~ 25646286 (-) False XLOC_013449
TCONS_00026552 mRNA downstream 114380 25572222 ~ 25645680 (-) False XLOC_013449
TCONS_00026549 mRNA downstream 191066 25563292 ~ 25568994 (-) False XLOC_013449
TCONS_00026547 mRNA downstream 357345 25391171 ~ 25402715 (-) True XLOC_013447
TCONS_00026557 mRNA upstream 21108 25783446 ~ 25855263 (-) False XLOC_013452
TCONS_00026558 mRNA upstream 21108 25783446 ~ 25905574 (-) False XLOC_013452
TCONS_00026559 mRNA upstream 21108 25783446 ~ 25905623 (-) False XLOC_013452
TCONS_00026561 mRNA upstream 334476 26096814 ~ 26101800 (-) True XLOC_013453
TCONS_00026562 mRNA upstream 362325 26124663 ~ 26126258 (-) True XLOC_013454
TCONS_00026554 other downstream 1783 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026548 other downstream 243429 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026541 other downstream 601283 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026536 other downstream 763413 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026529 other downstream 1199663 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026560 other upstream 92672 25855010 ~ 25905598 (-) True XLOC_013452
TCONS_00026563 other upstream 440965 26203303 ~ 26203389 (-) True XLOC_013455
TCONS_00026577 other upstream 1118134 26880472 ~ 26894703 (-) False XLOC_013464
TCONS_00026581 other upstream 1374527 27136865 ~ 27136982 (-) True XLOC_013468
TCONS_00026582 other upstream 1544586 27306924 ~ 27307040 (-) True XLOC_013469

Expression Profile

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