RNA id: TU69484


Basic Information

Item Value
RNA id TU69484
length 411
lncRNA type intronic
GC content 0.46
exon number 1
gene id G62596
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57178397 ~ 57178807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcccaactcatgacattactaatctacatgaatctgcaggtacagtagctaaccaaccaggttcaacattagctagctaaaattaggcTATAGCTAAACAAATgcctctgagatacgaataataatgtcatacacgtaacgttagcgagccagcaagctaacgttagctagctagctaggtaaacaatgaaccataatcacaactcatgacgttactaccctgcatgaaactgcaggtagctaaccaaacgggttcaatgttaactagctaacattagaatatagctagccaagcaaatggctctttctgtcaaaattagaaatgtgtaatatctgaaaatgtagctagctagactattttACCCATGTACATCATTCATAGTTGGACGCGTCTCCTgtcagatgccatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69480 lncRNA upstream 2900 57175209 ~ 57175497 (+) True G62592
TU69479 lncRNA upstream 4296 57173893 ~ 57174101 (+) True G62591
TU69468 lncRNA upstream 19616 57158541 ~ 57158781 (+) True G62580
TU69459 lncRNA upstream 30748 57147356 ~ 57147649 (+) True G62571
TU69454 lncRNA upstream 40198 57137997 ~ 57138199 (+) True G62566
TU69494 lncRNA downstream 21741 57200548 ~ 57200767 (+) True G62606
TU69496 lncRNA downstream 25659 57204466 ~ 57205061 (+) True G62608
TU69498 lncRNA downstream 33210 57212017 ~ 57212232 (+) True G62610
TU69500 lncRNA downstream 37958 57216765 ~ 57217264 (+) True G62612
TU69502 lncRNA downstream 45342 57224149 ~ 57224784 (+) True G62614
XM_036980732.1 mRNA upstream 115546 57035608 ~ 57062851 (+) False vsir
XM_021605762.2 mRNA upstream 115546 57035617 ~ 57062851 (+) True vsir
XM_021605747.2 mRNA upstream 274171 56894252 ~ 56904226 (+) True eif3s6ip
XM_021605703.2 mRNA upstream 581744 56551748 ~ 56596653 (+) False LOC110525521
XR_005052193.1 mRNA upstream 1153484 55976159 ~ 56024913 (+) True LOC118964919
XM_036989719.1 mRNA downstream 443460 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA downstream 515691 57694498 ~ 57722025 (+) True LOC118964920
XM_021605791.2 mRNA downstream 627327 57806134 ~ 57937988 (+) False wdr11
XR_005052202.1 mRNA downstream 782909 57961716 ~ 57963823 (+) True LOC110525578
XM_036980882.1 mRNA downstream 1629563 58808370 ~ 58838199 (+) False fam160b1
TU68593 other upstream 926382 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 930627 56246584 ~ 56247770 (+) True G61804
TU68019 other upstream 1148026 56019476 ~ 56030371 (+) True G61284
TU67933 other upstream 1255021 55905508 ~ 55923376 (+) True G61202
TU66625 other upstream 2456934 54721188 ~ 54721463 (+) True G59963
TU70898 other downstream 987758 58166565 ~ 58168178 (+) True G63958
TU70899 other downstream 1042715 58221522 ~ 58222852 (+) False G63959
TU70900 other downstream 1042715 58221522 ~ 58223130 (+) True G63959
TU71238 other downstream 1408051 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 1486527 58665334 ~ 58665906 (+) True G64315

Expression Profile