RNA id: TU71261


Basic Information

Item Value
RNA id TU71261
length 573
RNA type TUCP
GC content 0.46
exon number 1
gene id G64315
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58665334 ~ 58665906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcgtatgcctcatgactaacgagacatggtgtgatgaaagaaacatacaggaactcaaatccttctgttcacctgatttagaattcctcacaatcaaatgtagaccgcattatctaccaagagaattatcttcgattataatcacagccgtatacatcccccccccaagcagacacatcgatggctctgaacgaactttatttaactctttgcaaactggaaaccatttatccggaggctgcattcattgttgctggggattttaacaaggctaatctgaaaacaagactccctaaattttatcagcatatcgattgcgcaaccaggggtggtaaaaccttggatcattgttactctaacttccgcgacgcatataaggccctgccccgcccccctttcggaaaagctgaccacgactccattttgttgatccctgcctacagacagaaactaaaacaagaggctcccacgctgaggtctgtccaacgctggtccgaccaagctgactccacactccaagactgcttccataacgtggactgggatatgtttcgtattgcgtcagattacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71259 lncRNA upstream 2856 58662213 ~ 58662478 (+) True G64313
TU71258 lncRNA upstream 3388 58661711 ~ 58661946 (+) True G64312
TU71188 lncRNA upstream 3768 58591113 ~ 58661566 (+) True G64242
TU71185 lncRNA upstream 66821 58596708 ~ 58598513 (+) False G64241
TU71187 lncRNA upstream 68109 58596708 ~ 58597225 (+) True G64241
TU71270 lncRNA downstream 15840 58681746 ~ 58682194 (+) True G64324
TU71271 lncRNA downstream 16837 58682743 ~ 58682956 (+) True G64325
TU71282 lncRNA downstream 30794 58696700 ~ 58697100 (+) True G64336
TU71285 lncRNA downstream 34550 58700456 ~ 58700805 (+) True G64339
TU71287 lncRNA downstream 36249 58702155 ~ 58702398 (+) True G64341
XR_005052202.1 mRNA upstream 701511 57961716 ~ 57963823 (+) True LOC110525578
XM_021605791.2 mRNA upstream 727346 57806134 ~ 57937988 (+) False wdr11
XM_036989719.1 mRNA upstream 899936 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA upstream 943309 57694498 ~ 57722025 (+) True LOC118964920
XM_021605762.2 mRNA upstream 1602483 57035617 ~ 57062851 (+) True vsir
XM_036980882.1 mRNA downstream 142464 58808370 ~ 58838199 (+) False fam160b1
XM_036980886.1 mRNA downstream 142778 58808684 ~ 58838199 (+) True fam160b1
trnaa-ugc mRNA downstream 395901 59061807 ~ 59061880 (+) True trnaa-ugc
XR_002473818.2 mRNA downstream 544100 59210006 ~ 59212175 (+) True LOC110525756
XM_021606181.2 mRNA downstream 618418 59284324 ~ 59299682 (+) False erlin1
TU71238 other upstream 77749 58586858 ~ 58587585 (+) True G64292
TU70900 other upstream 442204 58221522 ~ 58223130 (+) True G63959
TU70899 other upstream 442482 58221522 ~ 58222852 (+) False G63959
TU70898 other upstream 497156 58166565 ~ 58168178 (+) True G63958
TU68593 other upstream 2413319 56249888 ~ 56252015 (+) True G61806
TU71284 other downstream 33390 58699296 ~ 58700379 (+) True G64338
TU72488 other downstream 658730 59324636 ~ 59325129 (+) True G65442
TU73321 other downstream 1275580 59941486 ~ 59942064 (+) True G66188
TU75047 other downstream 2648968 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 3063859 61729765 ~ 61733388 (+) True G67930

Expression Profile