RNA id: XM_036935484.1


Basic Information

Item Value
RNA id XM_036935484.1
length 7191
RNA type mRNA
GC content 0.44
exon number 10
gene id deptor
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4236880 ~ 4302536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTAACATTTGCATATATCGCGCCTTCTTGGTTTACTTCCACAATGCCCACTTGTCTTGTGAGCGTTGCCAATTTAGAAACTTTGTCGCTATATTAAGCGAGTTTTCAGACCCCTCCAGCGACGTTTATTGGTAAAGGATTCCAGCGACAAATTCAGATTTTCTTTTTCAGGCTGCCTTTGGGGTTTTGACGCAGAGGGTGTCTATGATTTTAACAGCATTTAGCGACTTTTCCCACTCAATTCTACCGCAAACAACAGTGGTTGAAGGTGCAGGCTACTTGTGCAACATTAGTCACATCAACGACGCACCCACATGCCGCGTTCACGTACTAGTTGAAACCAGGAAACTGACATTTCCTGGTTGCACGCGTGTATAACTTCAACCTATTAGCAAGTCGGACATTTCAGAGTTTCTTAGTTCCAACTAGCACTTGAACGCGGCAATAATCAAGAGAGGCACAACGTGCGGCGGAAAAGGGCGAAAACGCGACGTGGAGACCGCAGTTGTGCCGCATCAAGCCAAATTCATGATGTGACGCCGTCGCGGAAACGGTAAAACGTAATCTAGCGTCTTCTAGCGACAAATCAAGGAGCCAATAGCTGTAATCACTGAAAAAAGTCGTCAACCCTGCACGGTGTCAACGTGCTTTTCATGGTAGGATCGCGTAGTAAACAGAGGCAGAGGTCCGAGTGGAGCTCATTACTACTGAAGAAATCTATGCACATTTCACAAGGAAACGCTGTTCGTTGAATGAAGCTTTACGGACGAGAAAATAATATGCATACGTTTAGATGGTTAGCGGACCAGTTACATTTTTAGAATACAAAAGAAGTTCGACATCAAGATAGTATCCCCTCTTGCATAGCTATAGATAGCGTCTGTCCATTTTTCACTGTGTGAaacgtgttttttttaaatgcgtttCTCACATTATGCTGCTGGTTTGCAAATCTAGGACAACGTTATCTCGAGGAACAATAAATCAGCAATTTTTTATCCATGGTGTTTGCAAGTTGTAAAGAGATGGATGGTATCGGGAACACAATGCAGAAGAAGGCTGCGGAGCTCGAGCGCATGGCCGAGGTTCTCGTCACCGGAGAGCAGTTGAGGCTGCGTCTCCATGAAGGGAAGGTGGTTAAGGACCGCAGGCATCACCTGAGGACGTATCCCAACTGCTTTGTGGCCAAGGAGCTGATCGACTGGCTGCTGGAGCACAAGGAGGCGTCGGACAGAGACACGGCCATCAAGATCATGCAGAAACTCCTGGATCAAAGCATCATCCATCACGTTTGTGACGAGCACAAGGAGTTCAAAGACATGAAACTGTTCTATCGCTTCAGGAAAGACGACGGGACGTTTCCGCTGGACAACGAAGCCAAGGTCTTCATGAGGGGACAACGGATATATGAAAAGCTGATGATGAACACGGAGACGTCCATCCTAGCGACTCGGGAAGAAGAGGGTGAGTCGTTTGAACGGACGCTGGTGGCCTCGGAGCTTGTTGATTGGCTGCTGGCGGAGGGAGAGATGGCGACCCGAGAGGAGGCGGAGCATCTTGGACGGAGGCTTCTAGAACACGGGATCATGCAGCATGtgaCCAACAAGCACCACTTTGTGGATGGAGGGCTGCTGTACCAGTTCAGACTGAACTTCAGAAGGAGACGACGTCTGATGGAGCTGCTGAACGAGCGCTGTCGCACCATCCCAGAGAGCCATGACAGCCCCTTCTGTCTCCGCAAACAGAACCCAGAGGGAAGCAACACCAGCTTCCTATCTGtgagTCCTACTAAAGAGATCAAGATGATAGTGGGTATCCGTCGTAGCAGCATGAGCAGCAGCTGTGGCAGCAGTGGTTACTATAGCAGCAGTCCCACCCTCAGTAGCAGCCCCCCGGTGCTCTGTAACCCAAAGTCAGTGTTGAAGAGACAAGTGAGTCCTGAGGAGCTGCAGACCCCAGGAGGCCCTTACATAAAGAAGACATTCACaATCGTGGGGGATGCGGTGGGCTGGGGCTTCGTGGTGCGAGGcagtaagccctgccacatccaggCTGTCGACCCCAGTGGTCCCGCAGCAGCAGCTGGGATGAAgGTGTGTCAGTTTGTGGTCTCGGTCAACGGGCTAAACGTGCTGTCTCTGGACTACAGGACAGTCAGTAACCTCATCCTGACCGGGCCCAGGACCGTTGTCATGGAAGTCATGGAGGAAGCAGATTACTGAAGAGGCAGGCGATCACGTGGCAGGGGGTGTGGCTGAGCAGAGTAGACCCAAGGCAGACTCTAAAGACACCATAGAGATAGAAGTGCCTTTATGGAACTCTGTGGGAAACTCTCTCTGGGCTTCTAACTCAATGGGAAACTCTCTCTGGGCTTCTAACTCAATGGGAACCTCTCTAGGCTTCTAACTCAATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTATGGGCTTCTAACTCTATGGGAAACTCTCTATGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGCCTTCTAATTCTATGGGAAGACTCAAGCTCTGCCAGCCACCACCCACGTCTCTTTCCTATTGGACGCTGCTTCCCTCTGATGGCCGCCAATAGAACTGCTTTGAGAAGAGAGATGGACATTAGTTACTCTGTTAGATACACACATCTAGTCATTGGTCTCCTGTCTCATCTGTCTAGTTGATGTTGAGACATCAGATGGACCCTGATAACATAACAGCCCCCTGCTCCTTGATTTAGGGGACTGTGCCCTGCTGTCCCCTTCTGGTTTCTCACTGTCTCCTGTggtctgtgttttctttatgtatTGATGGTACTACCTACCCATGTGTGAAGCTGTTTGGGGAGAGACAGTTCTGGACCTGTCTagatctgtctgtctttctctatccCGGGATGAGATGTGGTGAAGTTGAAGACAGGCCTGAAGGAGACGGGCGGCATATCATTCGGGACAGGCCTGAAGGAGACGGGCGGCATATAATTCGGGACAGGCCTGAAGGAGACGGGCAGCATATCATTCGGGACAGGCCTGAAGGAGACGGGCAGCATATCATTCGGGACAGGCCTGAAGGAGACAGGCAGCAGATCATTTCGGGACAGGCCTGAAGGAGACAGGCAGCATATCATTTGGGACAGGCCTGAAGGAGACAGGCAGCATATAATTTCGGGACAGGCCTGAAGGAGACAGGCAGCATATCATTTCGGGACAGGCCTGAAGGAGACGGGCAGCATATCATTTCGGGACAGGCCTGAAGGAGACAGGCAGCATATCATTTCGGGACAGGCCTGAAGGAGACAGGCAGCATATCATTAGGGACAGGCCTGAAGGAGGCAGGCAGCATATCATTCGGGACAGGCCTGAAGGAGACAGGCAGCATATCATTCGGGACAGGcctgaaggggagagagacggcATGTCATTCAGGACAGGCCTGAAGGAGACAGGCGGCATATCATTCGGGACAGGCCTGAAGGAGACAGACAGCATATCATTAGGGACAGGAGTGTGAGGCATTAACAAGTGACTGTTCAATCCTCTGGGCCACATGATGCAAACCACGTCCAACTAATCCAGAGCTGTTTGGACGTGTGACACAGATACCAGCCTGGTTCCACTGTGCCGTTGGCTAGAGATCACTCACTATACATTGTggcagttgtgtgaagttggcctTAGTTTAACCAAGCAAACAGGGTTGTAATATTGTTCATGTTTATGCAGGACTAATTGTTGTTGATGATTTGTCTTTTCACTTAGGGCGAGTTTCCCGGACAACAAATCCTGGACTAAAAAATCTAAATCAATAGATATTCTCCATTTGAAAGTCCAAGATTATTCTTTGTTCAGGAAACCGTCCTTTTGAAGACAAAGTAGGTAGCTACTGGCTAGTTAATGAGGTAACACTTGACTGGATGGTTCTACTGTCTGTAGGCCTGAATATCATGATTATAATTACCACATAAAGGATAGGACTCGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTGAAGGATATGTAGACCTGAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTGAAGGATATGTAGACCTAAAGGTTGCGCCTGTAACAACTACCTTCACTCTGTCATGACACAACGAACTATTACCCATCAGGCCCCTTTCCCAGACATGCATTTTGCTTCGTCTTGGACTAGAAAGCAAGCTGAAGGGAGAATCTCCCGTTGAAAGAGCTTTTTGGTCCAGGGAATCTGCTCATGGTGATATAAATGGGGTGGTTTGCATAGTTTTCTAAGATTTATAATGTGTAATGACCGTGATGAGTCTGTTTCTTTAGCTCCGGCATTGAGGCCTATGATGACACCCACCTGTTACCAATAGCCGAATGTGGATGtcttatatccactatagtccctAGTCTTTCAGAAGTGGCATGTTCCACACTACCGTCAATTCTATAATATATGGAtatgttaatatatatatatatatatatttaatgtaGATCTGTGTATGGATGTAGGCTGACTAAGGCACTTTAAAAATGAAAATAACTGCATCAGTTTGTTTTCTAGTTAAAATGTCAGAAAATGGATAGTGTGTTAAGACGTCACGATACTGTACCATCCTGAAACATAAACACATGATGATCAACCCTTTCTATTCGCCATCAGACCCGGTTCTACTTGTATTTAAGAAGGAGAAAGGGGTTTTATTTCGGTAGCTAGCTGTGAATTTAAAGTAGAAGAACTATTGGTGGCACGAGAGAAACAATCTATGGCAGTATTTAATAACAGAGTCATCTGTAGCTCAGTGTACCAGGGTCAACTGTGGTCTTATGACATCAATTCCTGGTCAGATAAAGTAGCCTAGGTTCATTGTAAGatttaataataaaataatagcaGTACAAGCTCTATGTTCATCTTTCTTCGATATGCAGTGTTGTTGTTTACCATAATGTCAAGCCTCAAATCATCAGGtttgattttagatttttttttttaaaacagtcaCTTTTTGACAAGCTAGGATTCTGTCTCTTTTTATAATGTGCTTACGTGTGTAAAGCAACTAAATGCATCATACACTTACATAGTTTCTTGAATGTAGTGCTTGCTAACGATCCAGGGTTCTTTTTTCAGGACTGATATATCAATGGTTAAGCTCTCACTATGAACATTAGACATCAGTGATTGGGTGAATGGTTGCTCTCACTATGAACATTAGGCATCAGTGATTGGGTGAATGGCTGTTCTCACTATGAACATTAGACATCAGTGATTGGGTGAATGGCTGCTCTCACTAAGAACATTAGACATCAGTGATTGGGTGAATGGCTGCTCTCACTAAGAACATTAGACATCAGTGATTGGGTGAATGGCTGCTCTCACTAAGAACATTAGACATCAGTGATTGGGTGAATGGCTGCTCTCACTAAGAACCTTAGACATCAGTGATTGGGTGAATGGCTGCTCTCACTAAGAACATTAGACATCAGTGATTGGGTGAATGGCTGCTCTCACTAAGAACATTAGACATCAGTGATTGGGTGACCCACTGCAATGCATGAGGTTTTCGTGGTATGTTGGTTTTACACATTTCTACTCCACCACCTAGTTTCATGTTAGTCCTGTAATGAATTATTGGTTCTGCCATACTAGGAAAGGCTTGTGTTGTTTGGTTAAGCAAGAACTTAGAGAAATTCACATTACAATGAGTCATTTTAATACTTCAGCTGTTTTTGGTTCCACTTTACTGAAAGCATCCAGGGTAAAACGCATGATAACGTGTTATTACCATGAGCCTTTTATAATGTCTTATCAGGCTTATAAAAATGCTTATCCTGTATTAACACCTGTGTGTTTTAAACAGACACAATGACCAGAAAGAGCTGGAAATCCAGTCACTATTGGAACTTCTTAAATGTGCCATGTTATACATCTTGAAACATTTGCCTTAACTTTTTGTGATTTTGCTGCACGTCTTCTTTTCAGTTGGTGGTCGTTTTTAATATTTGAATATCTTCTCCTTAATTAAAGGGTTCACTATGCAATCCTCTTCCTGATCTGTCTTACTATATTAACCTTCTGCTGATTATTTTACAGACTGGACATCTTTTATTTTATTCTTGACAATCAGTGTTTTCTTGATACACAAGGTCTGAGTTTCCAAatgttagtgcactactttggaccagggcccagtggtgggggtggggggggttatatcactatatagggaatagaatgccatttgggacgctacGGAGATCTGAACAGCACAATGACCTGACGGCAGTACGGATAGAGATACAACCTGCCACGTACTCTCTGCTTCATAGAAGGTTTTACTAATGGTAATGAATCTATGACTTTTtgattaaaaaatatttaaaaaatctgttTATTTTTACCAATCAGTCAGCAGCTCATTTTAAAGGGATTCATTCATCTACAGATCATTATGTTCCTAAAATAATCTATGTACATTAAATGATCTAGATTACACTCTGGGCTCACCAAGTGACTATATAAAGGCTCTAATAGCAgtttgtgtacatacattttataaaATACATTGTGTGGATGAATGAATGTCAGGATAATGAAAATAAATAAGTTCACGTCTGGCATCACATCTGGCATCACGTCTGTGTTGTGCAATGCAGCTAAAGGCATAAAGTTCATATGTAAAGTTCACAATGTAAAGTTCAtatgtgttttaataaacatACTGGTTTGGTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121002 lncRNA upstream 4585 4227286 ~ 4232470 (+) True G106860
TU121001 lncRNA upstream 10486 4226264 ~ 4226569 (+) True G106859
TU120999 lncRNA upstream 12461 4224116 ~ 4224594 (+) True G106857
TU120997 lncRNA upstream 13924 4222458 ~ 4223131 (+) True G106855
TU120994 lncRNA upstream 14808 4221534 ~ 4222247 (+) True G106852
TU122100 lncRNA downstream 2776 4305312 ~ 4305573 (+) True G107580
TU122101 lncRNA downstream 3173 4305709 ~ 4305999 (+) True G107581
TU122102 lncRNA downstream 3652 4306188 ~ 4306575 (+) True G107582
TU122157 lncRNA downstream 46331 4348867 ~ 4349162 (+) True G107611
TU122158 lncRNA downstream 50705 4353241 ~ 4353525 (+) True G107612
XM_036935442.1 mRNA upstream 117313 4113122 ~ 4119742 (+) True LOC110507036
XM_036935438.1 mRNA upstream 151375 4065992 ~ 4085680 (+) True mal2
XM_036935433.1 mRNA upstream 171448 4050783 ~ 4065607 (+) True colec10
XM_036935245.1 mRNA upstream 814956 3407187 ~ 3422099 (+) False mboat1
XM_036935521.1 mRNA downstream 25447 4327983 ~ 4538057 (+) False col14a1a
XM_036935515.1 mRNA downstream 25450 4327986 ~ 4571003 (+) False col14a1a
XM_036935520.1 mRNA downstream 25451 4327987 ~ 4569652 (+) False col14a1a
XM_036935508.1 mRNA downstream 25454 4327990 ~ 4572381 (+) False col14a1a
XM_036935511.1 mRNA downstream 25454 4327990 ~ 4572381 (+) True col14a1a
TU120937 other upstream 98559 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 98559 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 209461 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 436703 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 441632 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 506203 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 555375 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 833820 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 993643 5296179 ~ 5299933 (+) True G108354

Expression Profile