RNA id: TU120909


Basic Information

Item Value
RNA id TU120909
length 1882
lncRNA type sense_over
GC content 0.44
exon number 2
gene id deptor
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4236880 ~ 4302536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGGCTTCTAACTCTATGGGAAACTCTCTCTGGCCTTCTAATTCTATGGGAAGACTCAAGCTCTGCCAGCCACCACCCACGTCTCTTTCCTATTGGACGCTGCTTCCCTCTGATGGCCGCCAATAGAACTGCTTTGAGAAGAGAGATGGACATTAGTTACTCTGTTAGATACACACATCTAGTCATTGGTCTCCTGTCTCATCTGTCTAGTTGATGTTGAGACATCAGATGGACCCTGATAACATAACAGCCCCCTGCTCCTTGATTTAGGGGACTGTGCCCTGCTGTCCCCTTCTGGTTTCTCACTGTCTCCTGTggtctgtgttttctttatgtatTGATGGTACTACCTACCCATGTGTGAAGCTGTTTGGGGAGAGACAGTTCTGGACCTGTCTagatctgtctgtctttctctatccCGGGATGAGATGTGGTGAAGTTGAAGACAGGCCTGAAGGAGACGGGCGGCATATCATTCGGGACAGGCCTGAAGGAGACGGGCGGCATATCATTCGGGACAGGCCTGAAGGAGACAGACAGCATATCATTAGGGACAGGAGTGTGAGGCATTAACAAGTGACTGTTCAATCCTCTGGGCCACATGATGCAAACCACGTCCAACTAATCCAGAGCTGTTTGGACGTGTGACACAGATACCAGCCTGGTTCCACTGTGCCGTTGGCTAGAGATCACTCACTATACATTGTggcagttgtgtgaagttggcctTAGTTTAACCAAGCAAACAGGGTTGTAATATTGTTCATGTTTATGCAGGACTAATTGTTGTTGATGATTTGTCTTTTCACTTAGGGCGAGTTTCCCGGACAACAAATCCTGGACTAAAAAATCTAAATCAATAGATATTCTCCATTTGAAAGTCCAAGATTATTCTTTGTTCAGGAAACCGTCCTTTTGAAGACAAAGTAGGTAGCTACTGGCTAGTTAATGAGGTAACACTTGACTGGATGGTTCTACTGTCTGTAGGCCTGAATATCATGATTATAATTACCACATAAAGGATAGGACTCGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTGAAGGATATGTAGACCTGAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTAAAGGATATGTAGACCTGAAGGATATGTAGACCTAAAGGTTGCGCCTGTAACAACTACCTTCACTCTGTCATGACACAACGAACTATTACCCATCAGGCCCCTTTCCCAGACATGCATTTTGCTTCGTCTTGGACTAGAAAGCAAGCTGAAGGGAGAATCTCCCGTTGAAAGAGCTTTTTGGTCCAGGGAATCTGCTCATGGTGATATAAATGGGGTGGTTTGCATAGTTTTCTAAGATTTATAATGTGTAATGACCGTGATGAGTCTGTTTCTTTAGCTCCGGCATTGAGGCCTATGATGACACCCACCTGTTACCAATAGCCGAATGTGGATGtcttatatccactatagtccctAGTCTTTCAGAAGTGGCATGTTCCACACTACCGTCAATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121018 lncRNA upstream 42951 4254102 ~ 4254936 (+) True G106869
TU121016 lncRNA upstream 44710 4252917 ~ 4253177 (+) True G106868
TU121008 lncRNA upstream 50645 4246739 ~ 4247242 (+) True G106864
TU121002 lncRNA upstream 65417 4227286 ~ 4232470 (+) True G106860
TU121001 lncRNA upstream 71318 4226264 ~ 4226569 (+) True G106859
TU120903 lncRNA downstream 592 4300835 ~ 4301991 (+) True deptor
TU122100 lncRNA downstream 5069 4305312 ~ 4305573 (+) True G107580
TU122101 lncRNA downstream 5466 4305709 ~ 4305999 (+) True G107581
TU122102 lncRNA downstream 5945 4306188 ~ 4306575 (+) True G107582
TU122157 lncRNA downstream 48624 4348867 ~ 4349162 (+) True G107611
XM_036935442.1 mRNA upstream 178145 4113122 ~ 4119742 (+) True LOC110507036
XM_036935438.1 mRNA upstream 212207 4065992 ~ 4085680 (+) True mal2
XM_036935433.1 mRNA upstream 232280 4050783 ~ 4065607 (+) True colec10
XM_036935245.1 mRNA upstream 875788 3407187 ~ 3422099 (+) False mboat1
XM_036935521.1 mRNA downstream 27740 4327983 ~ 4538057 (+) False col14a1a
XM_036935515.1 mRNA downstream 27743 4327986 ~ 4571003 (+) False col14a1a
XM_036935520.1 mRNA downstream 27744 4327987 ~ 4569652 (+) False col14a1a
XM_036935508.1 mRNA downstream 27747 4327990 ~ 4572381 (+) False col14a1a
XM_036935511.1 mRNA downstream 27747 4327990 ~ 4572381 (+) True col14a1a
TU120937 other upstream 159391 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 159391 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 270293 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 497535 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 443925 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 508496 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 557668 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 836113 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 995936 5296179 ~ 5299933 (+) True G108354

Expression Profile