RNA id: XM_036935521.1


Basic Information

Item Value
RNA id XM_036935521.1
length 5385
RNA type mRNA
GC content 0.56
exon number 43
gene id col14a1a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4327983 ~ 4572381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGTCGTTTACTTGACAAGTCCTGTCGAGGCAGAGTGCCTGAGGGTTTTTGTCGAATTCCACCCTCCCGTTTCGCTCCCGTCCTCCTGTTCAGCAGCAATTGGTCGATTTTTTTCTCCCTTTCCCCCCCGTCAGTCCACAGGATGAAATgaggtgaaggaaggagagagagaagtagagggggaTGAATAGCCGAAGGGATGGGTGAATAACGACGCAAGAAACACCCACCCCCAGTTTTAGTCTGGACTGACTGACGGAATagttgactgagagaggctgAAACAAAccagggagacagacacacactctggGGATTGAGAGGATCCGTGGGAAATAGGAGCGTTTAGGATTTGATGACTTGTGCAGAAGGAGCATCACAGTTGTAAGGATGCTGATTGTAGGACTCCCAATAAGGACGTGGTGTCCTCTGCTCTTCCTGGTGTTGGCTGTACATTTCCCAGCCCCTGCCCAGGGTCAAGTTCCAGCTCCCAGAAGGTTACGTTTTAAAGTACTGGGGACGAGCAAATTACATGTATCCTGGAAAGAGCCGAAAGGGAATGTCGACGGCTATAGAGTTTTATACCAGAGTGAACCAGGCGAAGAGTACAAGGAGCTGCGCGTTTCCAAGGGGGACCATAAAGTGGTGATCCAGGACTTTGATGCCATGAAGGAGTACCACGTCAAGGTTCTAGCTGTGAGAGGGaaccagcagagcagagcactaCAAGGGAAGTATGCCGCTGAAGacctggagggggagggaggagagagggagagcacatTGCCTCTGAGACTTGATGACACCGGAGGGACTGAGGAGATCAACGAGATATCTGGAGCGGATCCTTTTGTCTGTACGACTCAGGCCATAGCTGACATAGTGATCCTGGTGGATGGATCCTGGAGCATCGGGAGGCTCAACTTCCGCTTGGTCCGCATGTTCCTGGAGAACCTGGTCAGCGCTTTCAGCGTCGGGATCGACCAGACCAGGATAGGTCTGGCCCAGTACAGTGGGGACCCCAGGATAGAGTGGCATCTGAATGCCTTCACCACTAAAGATGCAGTCCTGGATGCTGTGAAGAACCTGCCCTATAAGGGAGGCAACACACTGACAGGCCTGGCCCTGACCTATATCCTGGAGAACAGCTTCAAGCCCGAGTCAGGCTCCAGGAGCGGGGTACCCAAAGTCGGTATCCTAATCACAGATGGGAAGTCCCAGGATGACGTGATCCCCCCTGCCCAGAGCCTGAGGGACGCTGGCATCGAACTCTTCGCCATTGGTGTAAAGAATGCTGATGAGAATGAGCTGAGGGCCATAGCTTCTGAGCCTGACAACACTCATGTGTACAACGTGGCAGACTTCAGCGTCATGAGCTCTATCATAGAGGGACTGACCCAGATAGTCTGTGAACGGGTAGAGGAGCAGGACAAGGAGATCAAAGGAGAGTCTGCAGGTCAGGAGACACAGGGAGCCCCTCAGGACCTAGTGACATCAGAGGTGACAGCCAGGAGTTTCAGGGTGTCCTGGAGTCACGCTCCCGGCAGTGTAGAGAAGTACCGTGTGGTGTTCTACCCTGCTACCCAGGGAGGACGGCCTGAAGAGGCTGTGGTGGACGGCACAGAGAACTCTGTGGTTCTGTGGCATCTCAACTCCTTAACAGAGTACCAGTTAGCTGTGTTCGCTGTCTACACCAGCTCAGCTAGCGAGGCACTTCGTGGCAGCGAGACCACATTGGCTCTCCCCATGGTGAACGGCCTGGAGCTGTACGACGTTACCCACAACACCATGCGGGCGCGGTGGAGCGGTGTGCAGGGCGTCTCGGGGTACATGGTCCTATACGCCACCCTGACCGAGGACCAGGCCTCCGACGAGAAAGAGATGAAGGTGTCAGACGCAGTAACTGATCTACAGCTGGAGGACTTGACTCCTGCCACTGAGTACACGGTGACAGTCTACGCCATGTATGGAGAAGAAGCTAGCGATCCTATGAGTAGCCAGCAGACCACCTTGCCACTGAGCCCTCCCAAGAACCTTGTGTTCTCTGAGGTGGACCACAACTCAGCCAAACTGTCGTGGGAAGCTGCCTCTAGGAAGGTGACAGGATACCGCATCATGTACGCCAAGACTGACGGGCTAAAGACTGATGAGGTGGATGTGGGTCCAGTCACGTCCTGGACTCTGAATGACCTGACGTCTGCAAGGGAGTATGAGGTAGCCATATTTGGGATCTACGACGAGGGCCAATCAGAAGCCCTCTCTGGCAGCTTCACCACCGACCCTGTGCCAGGCCCTCTTGACCTCCAGGCCAGTGAGGTCACCGCAGAGAGTTTCCGGGTCAGCTGGGGTCACTCTGCTCCGGGCATCGTCCTCTACAAACTGACCTGGGCTCCTTATGATGGAGGGGACACTAAGGAGATGGCTCTAAGTGGTGATGTGGACTCCTTCCTCCTCAGTGGACTGAGCCCTAACACGGAGTATGAAGTGATGCTCCAAGCCGTCTTCAAAGACCAATCAGAGAGTGATGCGGTGTTAGTGGTGGAGACGACACttgccaggacaacaacggTTGCCACTACAACGCCAGTAGTGCGTCAGGCGGTGAGAGGCCTGCAGGTCCAAGAGGAGACCAcctacagcctggaggtgtcatGGCAGCTGGAGGATCCTAAGGTGGACCAGTACAGAGTCACCTACGTCAGCCTCACAGGAGACCGCAACGAGGAGTCAGTCCTGGTGCCTGGGCAGCAGACCACAGTCCTTCTCCAGCCTCTGCTGTCTGACACAGAGCACAAGGTGACGGTCACCCCAGTCTACACAGATGGACAGGACGGCATCAGTGTTTCTTCTGTGGGCAGAACATTGCCCCTCTCGGCGCCTAGCAACCTGAGGGTGTCTGAGGAGTGGTTCAGTCGCTTCCGCATCACCTGGGACACGCCTCCTTCTCCCACCTTGGGCTTCAGGGTAGTCTACCAACCCACCTCTGTGCCAGGGTCAGCTCTGGAGACCTTTGTGGGAGACGACGTCAACACCATGCTGATCCTGAACCTGCAAAGTGACACTGAGTACACTGTGAAGGTCATCTCTTCCTACACCACGGGATCCAGCCAGCCTCTCCAGGGCACCGCCAAGACATtgTACCTGGGCGTGACCAACCTGAACACCTACCAGGTGATGATGTCCAGTATGTGTGTCCAGTGGCAGCCCCATGGTCAGGCTGACCTCTACAGGGTGGTCATCGAGTCTCTGCTCAaTGGCCAGAAACAGGAAGTGAGTGTTGGAGGCTCTGCGTCTAGACAGTGTTTCTATGATCTGACCCCTAACAGCCAGTATAAGATCAGCGTTTCCACCCAGCTACAGGACATGGAGGGGCCCGCCGTCACCACCATCACTACAACACTCCCCGCCCCCACCCAGCCACCGACACCAACCCCCACGTCACCCCCCCTACCGACCATACCGCCCGCCAAGGAAGtcTGTAAGGCAGCCAAAGCTGACCTGGTCTTCTTGGTGGACGGGTCTTGGAGCATCGGAGACGACAACTTCCAGAAGATTATCCGCTTCCTGTACAGTACGATGGGAGCTCTGGATCTGATTGGTCCTGACGGCACACAGGTTGCTATAGCACAGTTCAGTGATGATGCCAGGACTGAGTTCAAGCTGAACTCATACGCCAACAAGGAAACGCTGCTCGACGCCATCAGGCGAATCACATACAAGGGAGGGAACACCAAGACAGGCCGAGCCATTAAGCATGTGAAGGAATCTATCTTCACCTcagagggaggagtgaggagggggGTTCCTAAGGTACTGGTGGTCCTCACCGATGGCCGTTCCCAAGACGACGTCAACAAGGTCTCCAAGGAGATGCAGATGGAAGGCTACATCATCTTTGCCATCGGCTTTGCTGATGCGGACTACGGAGAGTTGGTGAACATCGCCAGCAAACCCAGCGACAGACACGTCTTCTTTGTGGACGATTTGGACGCTGTCAAGAAAATTGAGGAGCAGCTGATCACTTTTGTGTGTGAGGCTGCCACTGCCACTTGTCCATCGGTTCTGATGAGCGGCAACACCATGGCAGGCTTCAGGATGATGGACATGTTTGGCCTGGTAGAGAAGGAGTACAGTAACGTAGAGGGAGTGTCCCTGGAACCAGGCTCCTTCAACAGCTTCCCCTGCTACAGACTGCACAAAGACGCCCTGGTCTCACAGCCCACCAAgtaCCTCCACCCAGAAGGTTTGCCCTCTGACTACACCATCACCATCCTGTTCCGCCTGCTACCAGACACCCCCCAGGAGCCCTTTGCATTATGGGAGATCCTCAACAAAGACAATGAACCCCTGGTTGGGGTCATCCTGGACAATGGTGGGAAGACTCTGACGTTCTTCAACCACGACTACAAGGGAGACTTCCAGACAGTCACTTTTGACGAGCCTGACATCAAGAAGATGTTCTATGGCAGTTTCCACAAGCTCCACATGGCGATCAGTAAGACCACAGCCAGGGTGGTGGTTGACTGTAAGGTAGTGGGAGGAAAGCCCATCAACGCAGCTGGCAACATCAGTACAGACGGGGTGGAGGTACTGGGACGCATGGTACGatccagagggaagagagacaacTCAGCTCcgttCCAGATCCAGATGTTTGACATTATCTGCAGCACGTCCTGGGCCAGTCGAGACAAGTGCTGTGAGCTCCCTGGACTGAGGCTGGAGGAGGACTGTCCTGCCATGCCCCATGCCTGTAGCTGTTCTCAGGACAGTAAAGGACCTCCCGGACCCACAGGACCTCCCGGAGGTGCTGGTATCAGAGGGGCCAGGGGAGATCGAGGGGAGCCAGGCAATGTGGGGCCTCAAGGACTAGTTGGTGATAAAGGTCGTTCTGGACCACAGGGCCCCCCTGGTCCTCAAGGGCCTAGTGGACATTCCATCCAGGGACCACCGGGGAGTGATGGTGAAAAGGGGGAAAAAGGAGATGTTGGTTTACCAGGACCTCAGGGTGTTGGTGGATCTCCTGGCGGACCAGGAAGAGATGGACCAGTTGGACAGAGGGGCCTGCCTGGGAAGGATGGACCACAAGGACAGCAGGGTACGACAGGGCCTGTGGGCAGTCCTGGAGCCCCCGGGGCCCCTGGTGGAAGTGGCTCTCCTGGACCCCTGGGAGACCAGGGACCACCTCAGAGcggaggaccagagagagagatgagccaACTGTTGGTGTGATGATGGCCTGAGGCTGGTGACAGTTAATACAGCTGAATTCAGCCCATTCAGCCACTTCAGCCCTGGGCTAAAAGACAAGCATCGTTTGGCTCTGGAGCACACCATAAATCACAGGCCTGGGGGACcgcagagagagccagagagaatatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122102 lncRNA upstream 21408 4306188 ~ 4306575 (+) True G107582
TU122101 lncRNA upstream 21984 4305709 ~ 4305999 (+) True G107581
TU122100 lncRNA upstream 22410 4305312 ~ 4305573 (+) True G107580
TU120908 lncRNA upstream 25992 4299818 ~ 4301991 (+) False deptor
TU120903 lncRNA upstream 25992 4300835 ~ 4301991 (+) True deptor
TU122247 lncRNA downstream 1579 4539636 ~ 4540300 (+) False G107682
TU122246 lncRNA downstream 2480 4540537 ~ 4541278 (+) True G107682
TU122260 lncRNA downstream 43259 4581316 ~ 4581677 (+) True G107693
TU122264 lncRNA downstream 58129 4596186 ~ 4599513 (+) True G107697
TU122270 lncRNA downstream 77481 4615538 ~ 4616062 (+) True G107703
XM_036935488.1 mRNA upstream 25447 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA upstream 25447 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA upstream 25447 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA upstream 25447 4237055 ~ 4302536 (+) False deptor
XM_036935442.1 mRNA upstream 208241 4113122 ~ 4119742 (+) True LOC110507036
XM_036935553.1 mRNA downstream 64901 4602958 ~ 4648521 (+) False LOC110520696
XM_036935527.1 mRNA downstream 64902 4602959 ~ 4654733 (+) False LOC110520696
XM_036935529.1 mRNA downstream 64902 4602959 ~ 4654733 (+) False LOC110520696
XM_036935531.1 mRNA downstream 64902 4602959 ~ 4654733 (+) False LOC110520696
XM_036935534.1 mRNA downstream 64902 4602959 ~ 4654733 (+) False LOC110520696
TU120937 other upstream 189487 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 189487 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 300389 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 527631 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 206111 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 270682 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 319854 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 598299 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 758122 5296179 ~ 5299933 (+) True G108354

Expression Profile