RNA id: XM_021557008.2


Basic Information

Item Value
RNA id XM_021557008.2
length 6277
RNA type mRNA
GC content 0.47
exon number 7
gene id si:ch73-22o12.1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28399615 ~ 28469748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCACATATCGTTTGATTTCAAGGAACTGTGACGTTGCCTAGGGATAGTCTATGACATCACAACCAGTCACCCAGTAGAGATCTCTCCGCAGTGTGGAAATAGTTGGTAGAGCACACGCAATCCAAACCACCTTTTTAGCTACCAGAGCAATATACATTTGTGAGTTTCTTGTCAGCATCGCTTGGACCAATTGGATAGGATTTTTGTATTCATTTTAACGGGCTCCGACAGAAGCGCAGTCAGTGAAGGACGTTTGAAAACTAACGGTTTGAATTATTGACTTGTGATTAGTTCAGGATTAAGTTCAAACCGGGAAAAGACACGGATATAGGTTTTGTTTTACCAACGATATAAAATTCATTTTAATCAGCACAGACAGCATGGCGAGAGAGGACGCTCGGAATAGGCATGACTTCACAAAAATCATCGGACTGTTCAGCGTGGTCACGTTGCTGACTTTTCAAGgggCATTGTCTCAGCAGGTGAAGGTGGAACCGGAAGTGATGTCCTACCCCAGCCAGGCGGTCAACCTGAGGTGTGCCTTCGCAGACGCTGGAGGGATACAGCTCACACAGGTGTCCTGGATCTATGAGCCGAAGGAGGGCGAGCGGCTCAACATCGCCGTGTACCACCCTAAATTTGGGGCAAGTTTCCCCACATCGCCCCTGAAGGGGCGGGTCCGCTTCACGACGGAGCCCCCCTCCCTCAGCAACCCCTCCATCCAGATCTCAGACGTCAAGATGACTGACGAGGGGAAATACATCTGTGAATACGCCACCTACCCCAGCGGCAACGAACAGGGTGTCACCTCCCTCGTCATGCTAGCCAAACCCAGGAACTCTGCCTCCGGGGTAACAGTGATAGCCTCCACTGTCGCCGCGGGAGCCAAGCCAGTTGTTGTGGCCCGCTGTGAGTCGGCCGATGGTCGCCCTGCTGCCCAGATCGCATGGGTGACAGCTGTCAACGGCAACGCTACCTCCGCCTCTACGGCGGGCGCTGACAACACCGTGACGGTATCCAGCCAGTACATGCTGGTTCCCACAGCAGCAGACAACGGCAAAGACATCAGCTGTTTGGTGTCCCATCGAACCCAGGCCAAGCCTGAGAGCTTCCTGATGAAACTGGCCATCGAATacccCCCACAGGTGACCATCGTGGGCTATGATAATAACTGGTACATGGGTCGGACCAACGTGGCTCTGACCTGTCGGGCTACTGCCAACCCCATTCCTACCACCATCACATGGAAAACtATGTCCGGTCAGATGCCAGACACAGTGCAGGTAAAAGAAAACGTGCTGACCGTGCTGAAGGTGGATGAGCAGGCCAACACAACCTTCGTCTGCGAGGTCAAGAACCGCCTGGGCACCGGCAAGGACCAGGTCACTGTTATGGTCAGAGAACCCTCTGTGGTCCCCTCCAACGCAGGTGTGGTGGCAGGTGCTGTGATTGGCTCCCTTCTGGCCCTTCTCCTCGTCGCCGCCCTTATTGCCGTCCTGGTCACCCGGAGCCGCCGGCAACAGCAGGGTTACCGCGGCAACCCAAACCACAGCTCCTACGACATAAAGTCGCGTGTCTTCGGTGGCGGCAAGAAGGGGAGCAAGAACGGGACGGGTGCTGGCGCCGGGGGCAACGGGGCGGGCGGCAACAACAGCCCCATCTACGTCTACAAGGAGGGCTCCGCCCATGATGGCCTGACTGAAAAGGCCAATCACCACGTGCCGCTACACCTGGGGAGGCATGGTGAGGGGGGGGTTGCCACGGCGCAGGACATCCTGCTGAGCGGCGAGCTGGACGAGGCAGAGCGGAGAAAGTTTGACCAACTGGAGGATGACGAGGAGAGTTACGACCACTTTGGAAGGGGCGGGCCCATCCTGCAGCTCCGCCCAACACATGACCAGGACGGAATCATGGGCGGTTACCTTGACGACGACATGGAGTCTCAGCGCGACGGGTCGGTCATCTCACGGACTGCCGTGTACGTGTAGAGAGAACgggcagaggaagaggaagggaaagCGGGATGGAAGAAGGAAAGGATGAATGAACATGTCCTCCTTCTAGAGGAGTCGGTGGTGTTGGGTTCTCCTCTGTTGGATCATTTGAAATATATTAACGACGACCAACAATGCAGCCCATAGAGGGAGCAAGATGAACTGAATGAAGTGGCTGAGGGAGGGAATGTACAGAAACAAGATGGAGGACTGGTGTATTGATAAGACAAATATTTTTCTCTGGTCCCAATATGAAAAGTGGATCACTTGGGATCTATCTACCAAAACAAATGAAAGAAATCCTAAAACTATCTTCCTCACATTGCTGCTCTGTCTGTTGTGTTCCTTCTTTCCTTAGCTTAGGGACCTTGGAGATTGAAGCCTCCAGAGAGACACATTGCGGTAGGGACTTGTGGGTAATGGCATCTCCATGCAGCCGTTCCCACGTTAGAAACTCCTCACTAAAATATTCACTCTTATCTCCACTAAACGCACAGTAGCAATGTAAGGGGTGTCATGATACCTGCTCCCTGCTATTCTCGTCTCCTGTGGGACAACATTTGTTCCAGCTACAGTAGCCTTGTTTCTGCTGTATGTGACAGTACTGGGGAAGGGGAAGTTTGAATGTCAGATTCTCTCTCGTGTCTGTATGTTGCAGTAGGcctcattctctctgctattgtgCCATCAACTGGAAGTATGTGCAGAATTTAGTTTGGGACATTCTGAAATGACCAACAACTTACTGAAGGAGGTAGGGtagcctggggcggcagggtagcctagtggttagagcgttggactagtaaccgaaaggttgcaagttcaaatccccgagctgacaacgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctaaggtaaaataaaaatttagATGAAGAGTGCATGAAATGGGAATTTACAGCTGTtctcatctctggagagactgggagagaggatGAATTGATAGAGGGAACCGTACAGCTGTtctcatctctggagagactgggagagaggatGAATTGATAAAGGGAGAAAAGGCTCTGAAACAGCAGGgctgttctccctctcctctttttgATCCCTCTCTTCTTGTGGTGTTCCTGACACGAAGAGTTTGATTGCTAATGAGCCATGAAGTCACTGCTCAGCTTAGCCCACATGCACACCAAATTACCACCGCTTGGATGTTATGACGCAgtcacctctctctaccctgtgtgtgtgggtgatttACACAGGGCTGTGTGGAGGTCAGGGAtacagggagagcagagggagtaTTTCATGCCTCCCTACGTGTCAAACACCCCCCTTACTGTACCCCCTTCCTCCTGCCTGACCTGACTCAGAAAGCCATGGTGGAGTCATGCCCTGCTCACTGTACATCTCAGTTTTCATAGGTTGATTAGTCAGGTTATATAGAAATCAAAATACATGATGGCATATTTGCATCTAGCCAATTAAGATACAAATGAAGTCAAGTGAATTGATTGATTCTGTGCATACACAGGGGGGTGAATGACCTGTTATAGGACCTACATTGACTAGCAGAGGTCTGGGTATAATCCTTCATGATTCAGACAGACCGCAGCCTGATAGTTTAGTGACTAATTTGTCTTTCTAACAAGACAGTCGAGGGCTGTTCAAGCCAAATCACCATGTACAACTATTATACATCACTAGAGGCAAACAGACGACCACTGGAAGGCTATGACCAGCTGTCTTCCTGAAGAGCCTTACTTTCCTACCCTCAATACCCCAGATCTGAATCCCCTCTGAATCAGCCCCTTAACAACTCCTATCTCATGACTCCCCTGTGATTCATCGTGTTCCCTGGTTAATCAGTGGGGTTTACTTGGCTGCCCTGACCAGGCGAGGCGCCTGATTGGCCCATTAAGCCTGGGTTTGTTTCTGGGTCACGGCCAGCCAAAGGTCATGAGGTCACAGAGAAACACACTCTGGTGAGAGAGCAACGTGTAGTAGTGTTCCAGGATGACGTTAACTGTTGTGGTGGAGGTTGACCTTGGTGTGGGGGAGAGACCGGAACGGAGAGGGGGGAGACTGGGAGGAAGGGATAGATACTGACCCACTGCGAATCGCCTAACCATCAGCACTTGATAACACTATAGCTTAAGTCTGTCAGTCCTCGGTATAGGCCAAAACTCTGGCTTACATAAACATTATAGATACAGTACACATGCAGGgagcagggctctacagtgcagCCGTTTTACTTCATATGCGCCTAAGTGTTTTGCTTTGCGACATGTCATTTTTATTTTGGCGCCTAGACAATTTTAGAATTCTAGCTTTATTACCTCAAATATTTTTCACTGTGCTCCTAAATTTCTTTGTGTGCGCGCGCCTACATGGTTCAACTTAGCCACACACGTGCTCCTAAAAAAGGTCAGCGTAGAGGCCTGTAGTGAACTACTTATAATGACCACTAAGAAACACGTATCTCCAGTCTGCACTTGTATGTAACACCAAAACAGGATATGCCCACTAGTTATATTTGTATGAAGGTGATCAAGTGTGTCTTTGGAGAAATATTGATAATGTCCTTCAGTTTGTGATgtgaagagggagggaagggagaaagttgtatatattttttggtgtGAGGTATCTGTATACTATATATGTACGGATCATTATTTTTCTTGTCGAACTCCTGTGAAAAAATGTGGATATTGATCAGAGTGTAAATAACTGCTGTATAGTCAATGGTGTCATGTGGAACTCACTTCCTGGTTTGGCCAAGGTCAAAGTTCAGTCAGAGGCAATAATACTGTACTCCGAATGTAACTGCTTGAATAGACAACCCTTCAATGAAAAGGTATAGGATGTATAAGATGTACATCTTCAGTTATTAAATACTTGTGAATCTAGTTCATCTCAAGAACAATAGTTGAAATACATGTAAACATTTTAGTTTTTCAGCCAGGATGATAACTGGATTGGCAGGTTCACTAAACTCAATCAACATACTTAAGATACCTGCCCCTCAGCTAGAACCAATTTGGTTCTTTAGGTCTTAGCTCCTACATAGGCAGTGATCTGTGTGGTTTCTGAGTCAGCGCTGTGTGTGTGGCACAGAGGCTTTGGGACATCTGTCAGTGCCACGGTGTGTAACCCAAATGTCCATTTCTTGCCCCCTCTGTCTCTTAGCATTGGGAGTtagaggagacattactgtacACTGTCCCCTGcagcctgatctctctctctctctctctctctctctctctcacactctctcactctctcactctctcacagaaAGGGGGAACTAGTAGGAAACGTACACAAACACTTAGTGGTTCAAACTCTGTCAGAACATTCACAGACCCTTCTGTTCtccagagactgagagagagccacacacacactcctcttgCCCACTGTCAGGGATTTAAGTAACATGTGTTCTGAGAACACTTTCTGAGAATCATCTgtactgttactctctctctgtgagggctGTGTTTTTAAAGCTTTCATAAAATGAATACCCAATTGGCCAATTTTTAAAAAAAGTAAATGCTTTCTGGGAATCTACTTCTCTTGACCTCTGCTTGTACTGTCTGGCACAAaggttttaaaataaaaataattttagAGAGTTGACGTAATGATCCTGACCTGGAGCTAACACAGCTTGGTTGTAGGTTGTTATTTAGTAGTTGTTGTTAATCCACATTGTCCTTCTCTGGCTCTAAACACTGATGACTAATCCAAGCCTTAACTTCCTTGTCGTCTCGATCGCTCCCCCCTGACATGTACAtagtataaatatataaatacagtatctagcggaaataaaaataaagaatgaCTCATTTATGGTGTCACGTGTTCTATTTCTCAGCGCCAAGCATGAAGGATTTATTCTCTTCTGTATCAATGCTTATTTTACAAGTCCTTATCTTTTTTCTCTCTTATTGCAGTGCTTTATCATGAATGCTTTTGGAGTGCTTTATTTCTCCACTGCTTTGCTGTGACTACTACGCCACAACAGGCTTCATGTGCTTTTACCCGGCACCATGTTGTACAGTGCACTCAACAATCTGACCACAAAATGTGCTTTTTATTCACCGCTCTCTGAACTAGTTTTTTTTCTCTAAAGAAACCTTTTAGAATTTGTCACTATTTGTCATGTCTttctattttgttgttttttttgtatttggtTGCAATTAAAGTTTTCTTGATTTTTGAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148264 lncRNA upstream 17234 28311826 ~ 28382924 (+) True G128549
TU148276 lncRNA upstream 20056 28379782 ~ 28380102 (+) True G128561
TU148261 lncRNA upstream 95161 28304484 ~ 28304997 (+) True G128546
TU148246 lncRNA upstream 134704 28264194 ~ 28265454 (+) True G128531
TU148195 lncRNA upstream 149397 28247437 ~ 28250761 (+) True ddr1
TU148400 lncRNA downstream 117556 28568316 ~ 28600609 (+) True G128679
TU148373 lncRNA downstream 148527 28599287 ~ 28644026 (+) True G128652
TU148440 lncRNA downstream 182836 28633596 ~ 28634986 (+) True G128719
TU148361 lncRNA downstream 237493 28688253 ~ 28689570 (+) True G128640
TU148462 lncRNA downstream 239335 28690095 ~ 28690399 (+) True G128741
XM_036944357.1 mRNA upstream 43916 28338839 ~ 28356242 (+) False vars1
XM_036944361.1 mRNA upstream 43916 28338839 ~ 28356242 (+) True vars1
XM_021556914.2 mRNA upstream 61508 28335510 ~ 28338650 (+) True LOC110485753
XM_021556935.2 mRNA upstream 65544 28331733 ~ 28334614 (+) False ino80e
XR_002468004.2 mRNA downstream 86773 28537533 ~ 28681607 (+) False LOC110485836
XM_021557031.2 mRNA downstream 86775 28537535 ~ 28687330 (+) False LOC110485836
XM_021557045.2 mRNA downstream 86775 28537535 ~ 28687330 (+) False LOC110485836
XM_021557037.2 mRNA downstream 132983 28583743 ~ 28687330 (+) False LOC110485836
XM_021557053.2 mRNA downstream 151895 28602655 ~ 28687330 (+) True LOC110485836
TU148132 other upstream 310713 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 682995 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1096603 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1209565 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 1239513 27148176 ~ 27160645 (+) True LOC110485212
TU148570 other downstream 481296 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 489139 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1026857 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 1033873 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 1149266 29600026 ~ 29641096 (+) True G130308

Expression Profile