RNA id: XM_021558501.2


Basic Information

Item Value
RNA id XM_021558501.2
length 4762
RNA type mRNA
GC content 0.47
exon number 12
gene id nagpa
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30779459 ~ 30798791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGACGTTTTCAGCAGGCAAAGTAAACAGAACATCATGTGCTCTTCTTGTCTTGGACAAGTCATATGACTTCCCTCGCGTTGATTATGGTAGCTAAAAAGTAGAGTGAGGCAGGCGCACACTTTCAATGTCTATGCTATCATATGGCAACACTTTCAGTGAATGGTCATTTTGCGTTGCTCCTGATATGGATTGGTATTTGGCTTTCGGAGTGCAACGATATTGGTCCCTCATTGGACGATGACCTCCTATCGCCGTACCCCTACGGCCATAGCCATGGACCCTCGCACTCCCACCGTCATGTCCGAGACTGCCAGTCCGTTGTCCATGGCAACGTCACCCACCAGACCTGGCCTGCCAGCAACCACACTGGGGTGCCTGTGGCTGAGTCGAAAGTCTTCATCTCTGACGTCCCTGGCACAACCCGATGGGTCACAGGTCACATTACAGTGGTCCACGACCCCCTGAGGACGGTGTCTGTGCTGGAGCCTGGAGGGCCGGGGGGGTGTGGGATGAACcagagggaggtggtggaggaaacTGCTAGAGCCGGCAGTTGTCTCTATGCCCAGAATGGAGGTTTCTTTGATACTAGGACCGGGGAGTGTTTGGGGAATCTAGTGAGTGACGGGGTGCAAGTGAGGGACAGCAAAGGGTTGCAGAATGCCCAGTTTGGCATCCGGAGGGACGGGACGCTGGTGTTTGGTTATCTCTCTGAGGAGGACGTTCAGGAAGAAGCCAACCCCTTTGTGCAGTTGGTCAGTGGGGTGGTGTGGCTGCTCCGAAACAGCCAGGTCTACATTAACCAGAGCATACAGGCTGAGTGTGACACGACACAGGAGACGGGGAATTTCCGCCATTTTGTGGACGTAGTGTCAGCCAGGACAGCGGTTGGTCACGATGAGGAGGGGAAACTAATCCTGTTCCACATAGACGGACAGACTGACCACAGAGGtatGAATCTTTGGGAGGTGGCAGATTTTCTGAAAGGTCAGGGGGTCATCAATGCCATCAACCTGGATGGGGGTGGTTCCTCCACTTATGTGGCGAACGGCTCATTGGCCAGCTACCCCTCGGACCACTGTGTCTCAAACCCCATGTGGCGCTGCCCTCGGCGGGTCTCCACCATCCTGTGCGTCCACCAGCCCCAGTGTCAGCCTGAGGACTGCAGCGGGCACGGGACGTGCATCAATGGGCACTGCCAATGCCAGGAGGGCTGGAGTGGGACTGGCTGTGACACCCTGGTGTGCCAACCTCCTGCCTGTGGTGCCCACGGTGTCTGTACACAGGATGGCTGTGCGTGTGACGCTGGATGGAGAGGGAAGAACTGCAGCCAAGtGTGTGATTTGGGTTTCTATGGAGACGGCTGCAACCAGACATGCACCTGCACTAACGGGGGCTTATGTGACACTGTTCACGGTGACTGCAGCTGCCCCATTGGTTTCCGTGGCGACTCCTGTGAACAAGAGTGTCCTCTGGGTTTGTACGGGCTGGACTGTGGGCAGAAGTGCCAGTGCCAGGACATGTGCCCATGTGACCCGGTCACAGGAAGCTGCAATGCCTTGTTCCAGGGAGAGAAGAACCAGAGCATACACAGAGCTGGCCATTGCCTGGCCAATCAGATGTTTGCAACATGGAGCGAGGAGGAGGCACACAAATCCAAGCCTTATCTCTCCGAGCAGTGCTGGCTCATCGTCACTGGCCTGTTGACCTCTCTGCTGTTGTCCAGCCTGGTGGGTCACCTGATCATGTGTTGGCGGTCCCCGGCTCACCACCCCGGCCGTGTGGACTACTCCTATGTGCCACTGACAGAGATTGGTGGTGCGTGCAGTTCAGGGGACCGAGGGAAAGGGTCGCAACCCAGCAGAGGCGTATTCGAGATGGACTCAGACTCCCAGGATGAACTGTGGTCGGGTCCGCGCTGAGGGAGGGTGATGGGGGGACGGGTGGGAGTGATCCTACCCTGTTAGGACCGTCTGGCGGAGCTATCTCTAACATATTGTAAAGAGGGGAGGAAGGTTTATATAGAGAATGGGTTGCAATCaatgaaggagaggaagagatggagccAGGGATAGAGAAGAGCATAAAGAGGTCAGAGCTGGAGGGAGTGCAGTGCAGAGAGAGGGATCcaagagaaggagggggggtggGATGACGAGGCCACCGGATGTTTCAAACTCTATCCCCTATTTGAAGAGAGCTATTTGTATTTTCCCTCTGGCTCATCAGCCACCATCTCGTTATCCAGAGTGGATGTAAAGAGGAAAAACAGACTGAAAAGAAAGAGGCATAGAAGTAAGAGAAAGAAAATAACTTCTCACCCTTtgtactgttttttttaaactaaatgaCTATTTTATTGTCCTCCACTCTAGATTTTTCTAAGTGACAAAGAAGAAACAATATGCCAAAATATTTAATTGTGACTAATATCAACAGTAGACTGTATGTTTCCATATAAGAATAGCTATTTTAAGGGGACATAAACAGATAAGGCCTTTGTTTACCATGTTCCACAAGCATGGGATGGATTTCTCCACTTGTTGCCATGAGAACAGACAAGGTAAGAACTTTGAACCCTAGCCAGGAAATCTCCAACCCACTGAACCTTGTATTTATGGAGTCCACTTTATCAAATGATTCAATGTGAATGCACCCATGTTCACTGGGATTGTTTTTAATATTTCCAAACCATTTTTTTCTGTGAAGTCATATTTCCACCAGCCCCGTGAAGCACCCATTTTTGTAACTGTTCAGACGAACTGTTGAAATCATGTTTAAAGGTTGTCTGGATGCCAAGTGTGCTTCTGGTTCAGCCAACATTTTCTAAGGCAGCAGTAGGGATTTGATTGCAGAAATAAGCATGGACCCAAACTAGTTTGACAGGACCTGAGTGAGTATATTTTTTTTGTCTGACAGCTTGTTTGTTGACCGCTCCTTGACCCCAATCTCAATTATTTAACAGAAAGTTAATTCTAGTTATTTTTCAGTTGAGGCTTCTCAGAGACTAGATAATCCTTTCTCTTTTCCATATTATGAGAATTGTGTGGCGGCTTGGTGTGGGGGGGGTAATTATGTTGGGAGAGTGGGGATGTAAAGAAGGATGTTGTTCAATTTTAATCGAACTGTGTGTGGAGTTATCTATATCTCTCAGACTAAGGTTAGGATTCACTTTGAGAAATACCAGAGGTTGTTATATTACAAGGCTGTGGGAGAACACTTGATGGGAaatgtgttttgttgatgttCTGACATGTGTATTTAACATGCAGGTTACCAGATTGTGGTCTATATGGAGGCTGTTAGTGAGTTGGATTGTCCCACTGAGACTACTAATGACTTGTGCTCAAAAACAGTGAAAGGACTTTATACAGTGACAATGACTCACTGTGTGCTAGCGATGCTGTTGTGTTTGTATAGTTACCTATCTTGACTCGCACTTCCTTGAACTGGTGAAGAAAATGGAGGAATTTCATTTGCGCTCTCACTTCAGGCAAGGCAAAATGCAAATCAAGGTGATTGCTTGAGTAGATGTTTGTTTCAATACATTTGCCTGTTGTAGAGTTGCGAGACTGGTTTTGTTTGGTAAATTGTAGATGTTTTATTATGCAGCTGGATCACTACCCTGGAACAAATGTGGCAGGTTAGCCTtacggttagagcattgggccagtaaccgaaaggttgctagttcctTGCTAGCCATCGAGGTGAAAAATCTCTGTGCCCTTGAGTTAGGCACTTAACCCGAATTGCTCCAGGGTCACACtagctgtgaccccactctctgaagGGTGTCTTGGgaagagttgggatatgcaaaaaatgAATTTCCAAATCACACACGCGTAttaataggacaaatataagcacccaccaaataaTTTTTATTACATACTGTACGCTTGCAATTAATGGGTCTTTTGCTTGAATGtctttaattttattttttgcaCCCTTTTGCTGTAATAGTCTTGGCATattataaaaaagtatttaattgtTTTTATATTGTTCAGTTGTAGCCCAGCATGGGTTGTTATTGTCTGTGTGTTAACAACAAACCAGCCCTAGCCAGAGTACGAGCCAGGCTGCGGTACACACCGGGAGAGTGCCGGACATAATTTGCAAACCAATTCTACATGTAGAATCTGTTCGGTTTGTATTTATTTTGAAAGGCGCATTGTGTAATCTAGCTGTGCTTTGTAGTGACCACTGACTTGAGGGCCCTCTGGATTTCAGCCAGCCGGAGGAAGAATGACTGAGAAATGAAAAAGGGAGCTCCTTTACATAAACAGGAAGTGCACCTAGCATAATGCCAAATGATTGGGGGTTGATTTAATATATATTTGTTAAAAATTGGACTTCCTCTGTGTTTTACTCAGGCAAGGACATAATTATGTTTAGTCCCCATCCAATAAGGGTCAGGAATTGATATTTCAATATTTATAAGTTTGATAATGTGTTAACATTTGTCAAGGAATGTATTTGATGCACTATAGTCATGTATAGTGTTTAATCACAAACTAAAGTCAATGAAGTGAAACTGGTGTAAAAGTTTCCCATGATTGTGCTTCCTTTACTGTCATTGTGGTGAATGACAACTCGCATACCATGTCTACTTGAAACTTCTTGCTGTTAATATGCAAATGTCAAGAATTGAGAAACTGCATTTTGTTAATGGTGGTTGGCATGTCACTGCTGAGTTTTAGTAAAGATTATTTTTCACCAATAAAGCCTTTTTTGCAGTATCAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151635 lncRNA downstream 48158 30730724 ~ 30731301 (-) True G131630
TU151634 lncRNA downstream 49812 30729432 ~ 30729647 (-) True G131629
TU151633 lncRNA downstream 50485 30728577 ~ 30728974 (-) True G131628
TU151625 lncRNA downstream 59469 30719750 ~ 30719990 (-) True G131620
TU151624 lncRNA downstream 59749 30719394 ~ 30719710 (-) True G131619
TU151677 lncRNA upstream 11533 30810324 ~ 30810727 (-) True G131661
TU151683 lncRNA upstream 15882 30814673 ~ 30815862 (-) False G131663
TU151680 lncRNA upstream 15972 30814763 ~ 30815862 (-) True G131663
TU151740 lncRNA upstream 116547 30915338 ~ 30918439 (-) True G131712
TU151755 lncRNA upstream 302188 31100979 ~ 31101745 (-) True G131723
XM_021558542.2 mRNA downstream 6056 30761285 ~ 30773403 (-) True LOC110486727
XM_021558487.2 mRNA downstream 20916 30748055 ~ 30758543 (-) True LOC110486705
XM_036945520.1 mRNA downstream 26742 30748055 ~ 30752717 (-) False LOC110486705
XM_021558465.2 mRNA downstream 220499 30557560 ~ 30558960 (-) True gbp
XM_036945463.1 mRNA downstream 261432 30509860 ~ 30518027 (-) True LOC110486664
XR_002468109.2 mRNA upstream 91024 30889815 ~ 30896340 (-) False c2h8orf37
XM_021558578.2 mRNA upstream 91150 30889941 ~ 30896340 (-) False c2h8orf37
trnas-aga mRNA upstream 96090 30894881 ~ 30894962 (-) True trnas-aga
trnas-aga-2 mRNA upstream 97352 30896143 ~ 30896224 (-) True trnas-aga-2
trnae-cuc mRNA upstream 98546 30897337 ~ 30897408 (-) False trnae-cuc
TU150630 other downstream 900891 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 2301628 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2468727 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 2629473 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 3012927 27766157 ~ 27766532 (-) True G129250
TU151687 other upstream 90902 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 98235 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 393628 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 393675 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 393675 31192466 ~ 31196292 (-) False LOC110486852

Expression Profile