RNA id: TU149009


Basic Information

Item Value
RNA id TU149009
length 376
RNA type TUCP
GC content 0.56
exon number 1
gene id G129250
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27766157 ~ 27766532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaacacctatgtgagaatgctattcattgactacaactcagcgttcaacaccatagtgccctcaaagctcatcaataagctaaggaccctgggactaaacacctccctctgaaactggatcctggacttcctgatgggctgcccccaggtggtaagggtagataacaacacatccgccacgctgatcctcaacacaggggcccctcaggggtgcatgctcagtcccctcctgtactccctattctctcatgactgcacggccaggcacgactccaacaccatcattaagtttaccgaTGACACagtagtggtaggcctgatcaccgacaacgacaagacagcctatagggaggaggtcagagacctggctgtgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149003 lncRNA downstream 7920 27757801 ~ 27758237 (-) True G129244
TU148999 lncRNA downstream 13121 27752431 ~ 27753036 (-) True G129240
TU148992 lncRNA downstream 25778 27740161 ~ 27740379 (-) True G129233
TU148981 lncRNA downstream 35431 27730514 ~ 27730726 (-) True G129222
TU148974 lncRNA downstream 47038 27718824 ~ 27719119 (-) True G129215
TU149014 lncRNA upstream 5597 27772129 ~ 27772347 (-) True G129255
TU149015 lncRNA upstream 6068 27772600 ~ 27772803 (-) True G129256
TU149018 lncRNA upstream 8608 27775140 ~ 27775439 (-) True G129259
TU149021 lncRNA upstream 13397 27779929 ~ 27780140 (-) True G129262
TU149033 lncRNA upstream 27672 27794204 ~ 27794427 (-) True G129274
XM_021556680.2 mRNA downstream 133047 27419646 ~ 27633110 (-) True LOC110485571
XM_021556673.2 mRNA downstream 218359 27419646 ~ 27547798 (-) False LOC110485571
XM_021556688.2 mRNA downstream 218359 27419646 ~ 27547798 (-) False LOC110485571
XM_021556693.2 mRNA downstream 218359 27419646 ~ 27547798 (-) False LOC110485571
XM_021556707.2 mRNA downstream 218359 27419646 ~ 27547798 (-) False LOC110485571
XM_036944233.1 mRNA upstream 161132 27927664 ~ 27929816 (-) False LOC110534585
XM_036944219.1 mRNA upstream 166857 27933389 ~ 27942324 (-) False LOC110485663
XM_036944222.1 mRNA upstream 166857 27933389 ~ 27942324 (-) False LOC110485663
XM_036944213.1 mRNA upstream 166857 27933389 ~ 27975667 (-) False LOC110485663
XM_036944210.1 mRNA upstream 166857 27933389 ~ 27981431 (-) False LOC110485663
TU147564 other downstream 488033 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 1103143 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 1204030 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2989530 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 3231628 24531662 ~ 24534529 (-) True LOC110538887
TU149117 other upstream 330150 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 543787 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 710654 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 2102514 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 3123161 30889693 ~ 30895983 (-) True c2h8orf37

Expression Profile