RNA id: XM_021556707.2


Basic Information

Item Value
RNA id XM_021556707.2
length 4105
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110485571
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27419646 ~ 27633110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCCTCAGAGTCAATGGAACCTCTGCATGCTAGCCGACTGAAGAAGAAATCCCAGTCAGTGGATATTGCCACTCAAGGATTCTCCCCTACCCTGGTGCCAGCCTCACCTCACAAGACTGAACCACCTGTTACCAAGACAACCACGTTGGGGGTGCAGCAAAACAATGCAACCAATTCCCAGAGAATCTGCAGTCCACGGTGCAGCGAGCTGAAACGCGGCTACACCATCGATACCGGCCAGAAGAAGAGTCAAGAGAAGAAGGATGGCAGCAGACGCATGTCGTTCCAGAGACCCAAAGGAACCATTGAGTATGCTGAATCCGATGGCACTCCCAGGCCAGAGgctcaccatcatcaccatgctCCGGTGTTCTCAGCACTACGCCAGGCTCGTGTAGTGTCGTCCACCTCCGAGGAGGAAGAGGCCCTGACAGAGAAGTTCCTCAAAATCAACTGCAAGTACATCACAGACGGCAAGggTGCGGTGAGCGGGGTGTTGCTGGTGACGCCCAACAACATCATGTTTGACCCCCACAGGATGGACCCTCTGGTGCAGGAGCATGGCTGTGAGGAGTACGGCTACATGTGTCCCCTGGAGGAGGTCATGTCTGCAGCCATCTACAAGGAGATCACTGACAGCAAGATCAGAGAGGCCGTGCCTGCACATCTGGAGCCTTTGACGTCAGAGCGCgggccctccacctcctctcagcCGGACCCGGAGCAACGTCTGAGAGTCCCGGGCAACGGCAGCGGCAGCGCGGCCCCCCGCAGCACGGAGGGCTCCTTCTCCGAGGACGTCTTTACAGAGTCAGAGCTTTCCCCAATTCGGGAGGAGGCCACTTCCTCCGAAGACCCCCGGCTGGACATGTCCTCCTCAGCCACAGCCTCCACAGAGTCCATCCAAACTGTCGCCCAGGTGGAGGCCTTCATCCCCCCAGGAGAAGCCCCAGGGGCCGCAAGCTGCGCCTGCAAATCAGTCAGCCAGCCGCCAGTGGAGGGCCAGGGGAAACAACCCACCACAGCAGTAGACAATCCAGACAGCCACACGGCCCAGAGCCAGTCTCCCATGGGCTCCAAGCAGCACAGTGTGGATGTGGAGAAGGCAGCACCAAGCACACTCACCACCAGCCAGGGACTAGGCCAGGGACCATCCTCACGCCCTGCCTCACAGAGCTCTACCACCGGGCCTGGGGAGCCCTCCGGCCAGGAGGGGAGTCCAGGGGACAGGCCCAAACTGAGCAGAGAAGGGTCCCGGGACTCCGAGACGGACGTGGAGGAACTGAGGAAGATGTGGAAGAGTCACACTATGCAACAAGCCACAGAGCAAATGGAGAATGTAACAAAAAAGGAGGAGGGACAAGACTCTGCAGAAGtgtccaTGGAGCGGCGGAGGTACCGGTCCCACAAGTTCCTGTGTCTGCGGGTGGGCCAGCCCATGAAGAAGACGTTTGTGTCCAACGCCAGCGCCTCCATGCAGCAGTACGCCCAGAGGGACAGGAAACATGAGTACTGGTTCGCTGTGCCGCAGgagaggtCCGAGCACCTGTATGTGTTCTTCATCCAGTGGACCCCAGACATGTATGGGGAGGGGGTGAAGGGCATCGGCCACGAGCCAGGGTTCATGGTGGTCAAGAAGCCTTCGGGGTTTGAGACAAGAGAAGACGAACCCCTCACGGATATCAACAACAAAGAGTGGGAGGTAGTGTCACTGACTGAGTACCACCGCCGGATCGATGCGCTAAACAGTGAAGATCTGAAATCTCTCTGCAAGCGGCTTCAGATCACCACCAAGGAGGAGGTGAACTCTAAGCATGCCACCTCTATCAAGACGGAGCTGGAGCCTGAGACCTTCAGACCCAACCTCAGTGAGCCTAGCGAGCTGCTGGAGGCACAGCAAATAGAGAAGCTGGCCAAGAACCTCCCTCCCCGTACCATTGGGTACCCTTGGACCTTGGCCTATGGCACCACCAAGCATGGCATGAGCATCAAGAGCCTGTACCGGGCCATGCAGGGGCAGGACACCCCTGTGCTGTTGGTTATCAGGGACAGTGATGGTGGGGTGTTTGGTGCGTTGGCGTCCGAACCCTTCAAAATCAGCGAGGGATTCTACGGCACGGGAGAGACCTTCCTCTTCACCTTCTGTCCAGAGTTTAAGGTGTACAAATGGACAGGTGACAACATGTTCTTCATGAAAGGAGATATGGACTCCTTAGCTTTTGGTGGTGGAAGTGGTGAGTTTGGCCTGTGGCTGGATGGAGACCTGTACCACGGCAGGAGTCACTCCTGTAAAACCTTTGGCAACCCCATGCTCTCCAAGAAGGAGGATTTCTATATACAGGACATTGAGATCTGGGCTTTTGAATAACAAAACCCACCACGGGAAAAAGGGAAAGACTAAACATCCCTACAATGGCATTGTTGTCTCAAACCTAACTGCACATCACCACCCTGCTCCAACCCACTATCTGGGGCTCCCAGGACGGAGCCAGCTGACGGATGCGTGTTGTGCGTTCATACGTTACTACTGCAGTTATAACAGAGCTTTTCTTTGTGAATTACCTTGTGTGTATCTTGTTACAGCTGTGTGCAGCGTCTTTGAGGAggtgtactgtcctgtactacaCTGTGAGGCATCAGGGGGATGTGTGGGTTTGTTAGAGACCGTAGAGACGTCTTGTTGCAGAACCAAGGAGGAGCAATCAGATCGCTCTCTCTGGCCTCAGCAGGAGATGATGTCGGCTCAGGTTTGGGATTGAGAGAGAAACTGCCGTAGTCCAGATTATCTGAATTTTGAGACACTCAAGGAACCCCGCCCCTCAGAACTTGGTTGAAGTCAGTCAGTAGGATGTTACTATATGTGTTGTTACAGGCCTTTAGTGGAGAGATCCAGTAATAAAATTAACAACATGCGTTCCTTTGTTCTCAGAGGAGACGGTTGAACCTCTAACATAGTTCTGGTTGGTGTTCAAACACCTGAAGGAATAATCTCAGCAGGATGTAAGGATGATGAGGACActattatggggggggggggggggtattttacaTCTTTGGTTTACTTCTGAGGCAAGAACTACGAATAGTGTTGTGTATTGTAGTCCTATTGTTCACCATCACAGCACATAGCTAGAATTAGAATATTACCCATCGTTGTACTAATAATGTTCTGTTCAGTGGGTGTACTACGTGTGAGTTCAGCTACCACCGGCGCCCCTCAGGAGTCGTGTGTACTGTTCGTAGACAGTAATGTGTTGCAATAGATTTGTGGAATATGCAAATTACTGTCATGTGACCTCAAATAATCCAGGTTGGCGCTTTTCCTCGCCTGTCCGTGGCTCTTTATCAGAGAGGACTTGTAAAGCTTTCATGTCTTGATCCACAATTGCTTTTCTGGGTATAATTTGAAAAGCCTGAGACGTGGTTAACTGTTTTACATGCATATGACAattgtatattatttatatatgattatatataaatatatgataTAATTAATTATATGTTGCTGTTGTGTGACAGTGATCTTTTTGTGCTGATGTTTCAGCTGTTACAAATATAATGTATATTACCCTGTAAATTAATGTTAAAATAGTAGATTTGTTCCTATATAGAAACACATATATGATTGGTGGGTTGCTTCTAGCACTTGAATCCGGTCTAAAAGCGTTATAAACCAGGTTCTTAGACTTCTAGTAGCAGTAGCTGTACAGTACTTTTTTGTTTAGAATCATAAACATGTTAACTGTTAGTAGAACGCTTGCTGCTATAATATTAAGGGTAAAGCTAAACTAATGCTCTGTGTAACTAAAGGGGAGTGAGGAGGCTGAATGTCAAAGAAGATTTGAACTCTCCTCACAAGTTCTGCTGAGTGGTGAGTCTTCATTAGTTGGTAGACTGACTGTTAAGACTGTGGACTAAGAGAAAATATGTACAATTAAACTTCACAGCAGCTTTCCTTCCCCTTTCTGGTCTTCCACACCAGTATTTGTCTGTGGAGTCACAAAGAATAACATGGATAAATCCTCCTAATTATTTTACAGGAACACAATGTATTATTGATGTATAAAttaataaataacaataaaattGTTGTAACCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147676 lncRNA downstream 26999 27390869 ~ 27392647 (-) False G128003
TU147677 lncRNA downstream 26999 27390977 ~ 27392647 (-) True G128003
TU147670 lncRNA downstream 29821 27389588 ~ 27389825 (-) True G128001
TU147658 lncRNA downstream 50036 27367891 ~ 27369610 (-) True G127991
TU147558 lncRNA downstream 88483 27321474 ~ 27331163 (-) True G127905
TU147767 lncRNA upstream 29726 27577524 ~ 27584211 (-) True G128086
TU147833 lncRNA upstream 103192 27650990 ~ 27651280 (-) True G128151
TU148952 lncRNA upstream 136573 27684371 ~ 27684582 (-) True G129194
TU148963 lncRNA upstream 150535 27698333 ~ 27698996 (-) True G129204
TU148964 lncRNA upstream 152767 27700565 ~ 27700913 (-) True G129205
XM_021618192.2 mRNA downstream 34167 27381341 ~ 27385479 (-) True LOC110533720
XM_021556573.2 mRNA downstream 101927 27309432 ~ 27317719 (-) True LOC110485483
XM_021556566.2 mRNA downstream 103271 27308514 ~ 27316375 (-) False LOC110485483
XM_036943910.1 mRNA downstream 141488 27231829 ~ 27278158 (-) False LOC110485245
XM_036944024.1 mRNA downstream 141489 27231829 ~ 27278157 (-) False LOC110485245
XM_036944134.1 mRNA upstream 130510 27678308 ~ 27825113 (-) False LOC110485644
XM_036944138.1 mRNA upstream 130510 27678308 ~ 27825113 (-) True LOC110485644
XM_036944233.1 mRNA upstream 379866 27927664 ~ 27929816 (-) False LOC110534585
XM_036944219.1 mRNA upstream 385591 27933389 ~ 27942324 (-) False LOC110485663
XM_036944222.1 mRNA upstream 385591 27933389 ~ 27942324 (-) False LOC110485663
TU147564 other downstream 141522 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 756632 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 857519 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2643019 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2885117 24531662 ~ 24534529 (-) True LOC110538887
TU149009 other upstream 218359 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 548884 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 762521 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 929388 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 2321248 29869046 ~ 29878568 (-) True LOC110486376

Expression Profile