RNA id: XM_021556573.2


Basic Information

Item Value
RNA id XM_021556573.2
length 1830
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC110485483
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27308514 ~ 27317719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCACAAACTCTCGGCAGACAAGGCTGAGGTTGTTAAAACACCTGCAATCTAATTTCACACTGTTGAACTTCAAGCATGTGTTGCCAGAATACAAGAGAGGAGTACCAGTGACAATTAGTGGACAACATTTACATTTATCGCGGTGCCATGGGAAAAAGCATGAAGACGTAACCAAGGTGTACAATTACTACCCAGAGGGCTTAGGGGCGGCTCTCCGCCGAGAGCCGTTCGACTTCAACGCTGAGCCACCTTGGGATCCTAGCTGATAGTGGGGGAGCTCCATCTCCTAACTCGTCCATTTTGCTGCATACTATCAAGGACCCCAGGGGCTCAGAGAGAGACCACTTCGCCCAGGGGCTCAGAGAGAGACCACTTCAGCCAGGGGCTCAAAGAGACCACTTCATACAGAGGATCAGAGAGAGACCACTTCACACAGGCATAATTCTTTATGACTGGCAGATTAGCAGACAACAGTTGAGATGAAGGGACTAGCTGACGAACCAAACTACTCCGTCGCCCTGCTGGAGGGAGCCACGGCCCTCAGCGATGTGGTTGAGAATCACATTTATGAACAAACACTGGCTGAGAAGAATGCGTTCTTCGTGGCAGACTTGGGGGTCCTTATGAGGCAACATGTTCGCTGGCGAACCCACATGCCCCAGATGCGTCCCTTCTACGCTGTCCAAGCCAACAGCAGCCTGGCTGTCATTGAGATCTTAGCTGCTCTCGGGACTGGCTTCATCTGCACCAGCAAGTATGAGTTGGAGCTTGTGCAGGGCTATGGCGTTCCCTCTGAAGACATTATCTACAGCGGTGTGTGTAAACAACTCTCCCAGATCAAGTATGCCGCTAAGAACGGCATCGACTTCCTGGTGTGTGACAACGAGGCAGAGCTACGCAAGATCGCTCGCTGCCATCCCTGTGCCAAACTGCTGCTGCAGGTGGCCACAGAGACTTCCAGCGAGGGTGATGAAATGGGCATGTCGTTTGGCTCCAAGCTGAAGGACTGCAGACACCTGCTGGAGAGTGCCAAAGAGCAGGGCCTGCAGGTGGTGGGGGTCAGGTTCCACATTCCCAGCTCCTGTGACGACCCTCAGGCCTACAGCCATGCAGTGTCTGACGCTCGCTGTGTCTTTGACATGGGGGAGGATATTGGCTTCAGTATGACAATCCTGGATATTGGAGGTGGATTCAACGGCTCAGAGACTCAGCTGAAACAGATTAACAGTGCAGTCAGGCCGTTGTTGGACCTGTACTTCCCTGCATCGTCTGGCGTCTCCATCATGGCAGAGCCTGGCAGTTACTACGTGTCCTCCTCCTTCACCCTGGCTGTCAACATCATCGCTAAGGAAGTAGGCGCCCGGGATCTTCATGGCAATCTCAATGAACCATCTCCCAACGATGAGCCAGAGTTCCTGTACTACATGAACGATGGGGTGTACGGCTCGTTcactagcaagctagcagacaATGTGATTCCAGCTCCGGCTCTGCCCAAGAGCGGTGTGTCTGAGGAACCGGTGTTTGCCAGCAGTCTGTGGGGTCCGTCGGGTGATGAGCTGGACCAGGTGGTGGATCAGTGTCTGCTGCCAGAGCTCAGTGTGGGAGACTGGCTGATCTTCAACAACGCTGGGGCCTATAGCCTGGGCCCTCCGTCCACTTTCACAGATTCACCCAGACCCCCCGTCTACTACACCATCTCTACTGGAGACTGgtTTGAGATGCAGGATGCTGGTATCACCCAGGACATCAGCATGAAGAACTTCTCTCTGGTCCCCTACTTCCTCCACTCCAGCCAATCAGATGAAGCCCTGTCGGTCCCAGCTTAG

Function

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147608 lncRNA downstream 16108 27290244 ~ 27293324 (-) True G127945
TU147570 lncRNA downstream 123785 27184532 ~ 27185647 (-) True LOC110485234
TU147236 lncRNA downstream 168712 27140502 ~ 27140720 (-) True G127607
TU147225 lncRNA downstream 178539 27130539 ~ 27130893 (-) True G127596
TU147208 lncRNA downstream 190759 27118446 ~ 27118673 (-) True G127579
TU147558 lncRNA upstream 3755 27321474 ~ 27331163 (-) True G127905
TU147658 lncRNA upstream 50172 27367891 ~ 27369610 (-) True G127991
TU147670 lncRNA upstream 71869 27389588 ~ 27389825 (-) True G128001
TU147676 lncRNA upstream 73150 27390869 ~ 27392647 (-) False G128003
TU147677 lncRNA upstream 73258 27390977 ~ 27392647 (-) True G128003
XM_036943910.1 mRNA downstream 31274 27231829 ~ 27278158 (-) False LOC110485245
XM_036944001.1 mRNA downstream 31275 27231829 ~ 27278157 (-) False LOC110485245
XM_021618192.2 mRNA upstream 63622 27381341 ~ 27385479 (-) True LOC110533720
XM_021556714.2 mRNA upstream 101927 27419646 ~ 27429158 (-) False LOC110485571
XM_036944114.1 mRNA upstream 101927 27419646 ~ 27493032 (-) False LOC110485571
XM_036944128.1 mRNA upstream 101927 27419646 ~ 27493032 (-) False LOC110485571
XM_021556673.2 mRNA upstream 101927 27419646 ~ 27547798 (-) False LOC110485571
TU147564 other downstream 31308 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 646418 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 747305 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2532805 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2774903 24531662 ~ 24534529 (-) True LOC110538887
TU149009 other upstream 448438 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 778963 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 992600 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1159467 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 2551327 29869046 ~ 29878568 (-) True LOC110486376

Expression Profile