RNA id: TU147670


Basic Information

Item Value
RNA id TU147670
length 238
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G128001
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27389588 ~ 27389825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAATAGGAGCAAgaaaaaccgctggttgacttggcaaacaagatgaactggcacagagagacaggaaacacagggaaaaATACACCGGGGATAATACGCGAAACCTGGAGTGgctggagacaatcacaaggacaggtgaaccagatcagggtgtgacatacatGACATATACATCTAAAACCACTTGAGGTTACCACTTGAGGTCTCTGACCGCGCTCGTCCATAGTAGTCTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147658 lncRNA downstream 19978 27367891 ~ 27369610 (-) True G127991
TU147558 lncRNA downstream 58425 27321474 ~ 27331163 (-) True G127905
TU147608 lncRNA downstream 96264 27290244 ~ 27293324 (-) True G127945
TU147570 lncRNA downstream 203941 27184532 ~ 27185647 (-) True LOC110485234
TU147236 lncRNA downstream 248868 27140502 ~ 27140720 (-) True G127607
TU147676 lncRNA upstream 1044 27390869 ~ 27392647 (-) False G128003
TU147677 lncRNA upstream 1152 27390977 ~ 27392647 (-) True G128003
TU147708 lncRNA upstream 82173 27471998 ~ 27472270 (-) True G128027
TU147727 lncRNA upstream 111632 27501457 ~ 27501791 (-) True G128046
TU147767 lncRNA upstream 187699 27577524 ~ 27584211 (-) True G128086
XM_021618192.2 mRNA downstream 4109 27381341 ~ 27385479 (-) True LOC110533720
XM_021556573.2 mRNA downstream 71869 27309432 ~ 27317719 (-) True LOC110485483
XM_021556566.2 mRNA downstream 73213 27308514 ~ 27316375 (-) False LOC110485483
XM_036943910.1 mRNA downstream 111430 27231829 ~ 27278158 (-) False LOC110485245
XM_036944019.1 mRNA downstream 111431 27231829 ~ 27278157 (-) False LOC110485245
XM_021556714.2 mRNA upstream 29821 27419646 ~ 27429158 (-) False LOC110485571
XM_036944114.1 mRNA upstream 29821 27419646 ~ 27493032 (-) False LOC110485571
XM_036944128.1 mRNA upstream 29821 27419646 ~ 27493032 (-) False LOC110485571
XM_021556673.2 mRNA upstream 29821 27419646 ~ 27547798 (-) False LOC110485571
XM_021556688.2 mRNA upstream 29821 27419646 ~ 27547798 (-) False LOC110485571
TU147564 other downstream 111464 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 726574 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 827461 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2612961 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2855059 24531662 ~ 24534529 (-) True LOC110538887
TU149009 other upstream 376332 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 706857 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 920494 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1087361 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 2479221 29869046 ~ 29878568 (-) True LOC110486376

Expression Profile