RNA id: TU147608


Basic Information

Item Value
RNA id TU147608
length 511
lncRNA type intronic
GC content 0.39
exon number 2
gene id G127945
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27290244 ~ 27293324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatccaaaacataaagcaacatttacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaacaatttcagtctctcaatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaaatacagttgtatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaaggggggcgaatactttcgcaaggcactgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147570 lncRNA downstream 104597 27184532 ~ 27185647 (-) True LOC110485234
TU147236 lncRNA downstream 149524 27140502 ~ 27140720 (-) True G127607
TU147225 lncRNA downstream 159351 27130539 ~ 27130893 (-) True G127596
TU147208 lncRNA downstream 171571 27118446 ~ 27118673 (-) True G127579
TU147131 lncRNA downstream 245552 27044416 ~ 27044692 (-) True G127504
TU147558 lncRNA upstream 28150 27321474 ~ 27331163 (-) True G127905
TU147658 lncRNA upstream 74567 27367891 ~ 27369610 (-) True G127991
TU147670 lncRNA upstream 96264 27389588 ~ 27389825 (-) True G128001
TU147676 lncRNA upstream 97545 27390869 ~ 27392647 (-) False G128003
TU147677 lncRNA upstream 97653 27390977 ~ 27392647 (-) True G128003
XM_036943910.1 mRNA downstream 12086 27231829 ~ 27278158 (-) False LOC110485245
XM_036943896.1 mRNA downstream 12087 27231538 ~ 27278157 (-) False LOC110485245
XM_021556369.2 mRNA downstream 12087 27231829 ~ 27278157 (-) False LOC110485245
XM_021556409.2 mRNA downstream 12087 27231829 ~ 27278157 (-) False LOC110485245
XM_021556416.2 mRNA downstream 12087 27231829 ~ 27278157 (-) False LOC110485245
XM_021556566.2 mRNA upstream 15190 27308514 ~ 27316375 (-) False LOC110485483
XM_021556573.2 mRNA upstream 16108 27309432 ~ 27317719 (-) True LOC110485483
XM_021618192.2 mRNA upstream 88017 27381341 ~ 27385479 (-) True LOC110533720
XM_021556714.2 mRNA upstream 126322 27419646 ~ 27429158 (-) False LOC110485571
XM_036944114.1 mRNA upstream 126322 27419646 ~ 27493032 (-) False LOC110485571
TU147564 other downstream 12120 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 627230 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 728117 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2513617 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2755715 24531662 ~ 24534529 (-) True LOC110538887
TU149009 other upstream 472833 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 803358 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1016995 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1183862 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 2575722 29869046 ~ 29878568 (-) True LOC110486376

Expression Profile