RNA id: TU149021


Basic Information

Item Value
RNA id TU149021
length 212
lncRNA type intronic
GC content 0.48
exon number 1
gene id G129262
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27779929 ~ 27780140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAAAGCCAATATGACTTTGTTCCTACCTTGCTGGAGGAGTTGTTTGTGTAAATCGCCTATAAGCTTATTGACCTGGATGTGTGGCACccgactgtgtgtgactgtgattTGGCTGGAGAGGCTGTCCTTTGATGAAGCAGCGATAGGGAGGCCTGATTCTAACAGCTCACTGACACATGCCCGCAAACTCTGCCCTAACATACAATGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149018 lncRNA downstream 4490 27775140 ~ 27775439 (-) True G129259
TU149015 lncRNA downstream 7126 27772600 ~ 27772803 (-) True G129256
TU149014 lncRNA downstream 7582 27772129 ~ 27772347 (-) True G129255
TU149003 lncRNA downstream 21692 27757801 ~ 27758237 (-) True G129244
TU148999 lncRNA downstream 26893 27752431 ~ 27753036 (-) True G129240
TU149033 lncRNA upstream 14064 27794204 ~ 27794427 (-) True G129274
TU149034 lncRNA upstream 14520 27794660 ~ 27794885 (-) True G129275
TU149128 lncRNA upstream 122225 27902365 ~ 27905785 (-) True G129360
TU149137 lncRNA upstream 139353 27919493 ~ 27919757 (-) True G129368
TU149140 lncRNA upstream 143357 27923497 ~ 27923916 (-) True G129371
XM_021556680.2 mRNA downstream 146819 27419646 ~ 27633110 (-) True LOC110485571
XM_021556673.2 mRNA downstream 232131 27419646 ~ 27547798 (-) False LOC110485571
XM_036944233.1 mRNA upstream 147524 27927664 ~ 27929816 (-) False LOC110534585
XM_036944219.1 mRNA upstream 153249 27933389 ~ 27942324 (-) False LOC110485663
XM_036944222.1 mRNA upstream 153249 27933389 ~ 27942324 (-) False LOC110485663
XM_036944213.1 mRNA upstream 153249 27933389 ~ 27975667 (-) False LOC110485663
XM_036944210.1 mRNA upstream 153249 27933389 ~ 27981431 (-) False LOC110485663
TU149009 other downstream 13397 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 501805 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 1116915 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 1217802 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 3003302 24775220 ~ 24776627 (-) True G125305
TU149117 other upstream 316542 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 530179 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 697046 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 2088906 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 3109553 30889693 ~ 30895983 (-) True c2h8orf37

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU157673 True 224 lncRNA 0.45 1 CI01000027 2621370 ~ 2621593 (+)