RNA id: XM_036949622.1


Basic Information

Item Value
RNA id XM_036949622.1
length 4124
RNA type mRNA
GC content 0.60
exon number 23
gene id LOC110501618
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44757398 ~ 45073140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCACTGGCAGATTCCTTTTTTCCGCTGTCGTCTCCCGACGGTCatcgtctctccatctctccacctctctctcccttccccgtTTCCATCACCGTTCCTGGGATGTAAATTAGCTGCAGCGGGGGCTGTATGTTGGAGCATTGGTAGAGAACCAGGGATAGAGTGATTTAGAGGCTGGCCAAGCCAGGGAGGGAGGCACTGTGCCTGGGCACGGGGCTAGAGGACGGCTGGGAGGAAAGAGCTCTCTGGATGTATACCTGTGGAGGACGGCGCACCTCTTTTACCAACTGGGCCAGCTGCAGATAAGGAGGCGTGGTGGATAAGGACCTTCGGCACTACCTCAACCTGCGCTTCTCCAAGGGCTCCGTGGACCACGACCACCAGCAAATTATTAGAGACAACCTCTACCTCCGCACCGTGCCCTGTACCACCCGGCAGCCGAAGGAGGGAGAGGTGCCGGGGGTGGACTATAACTTTGTGAGCACAGAGCGCTTTATGGAACTGGAGCAAAGTGGAGCTCTGCTAGAGAGTGGAACCTATGAAGAGATCTTATACGGTACTCCCAAGCCCCCAGCCGAGCCCAGTCCGGCGGCCCCTCCACTGAATGTGAGTGAGGTGCTGCTTCCCGGAGCCCGGCCCAGCATCAAGGGCAAGTGGAAGAGGAACCAGTCGGTCAGAAACATGCAGCAGCAAGCCAGCCTGGAGCCGcccgaggaagaggaggaaagcagCCCCCCCGTGGTCAATGGGAACGGGGTGGCCATCACACCAGAGACAAGCGAGCATGAGGACAAGAGCACAGATGGGTCGGGGGAGGTTTCTGTGGTGGAGGCCCCGACACTGCCCCCTCCCGCCACTGAGCCCCCCACAGAGGGAGAGGAGCCCCCTGAGGTGGACTCCCCCAAATCACCCCCCAAACTCCccgagggggatgaggaggaacTGGGACCCCTGCCTGACAACTGGGAGATGGCCTACACAGAGAAAGGAGAGGTCTACTTCATAGAtCACAACACCAAAACCACATCATGGCTGGATCCTCGGCTGGCAAAGAAGGCCAAACCACCTGAGGAGTGCAAAGAGGACGAGCTGCCGTATGGCTGGGAGAAGATTGATGACCCTATCTATGGCAGTTACTACGTGGATCCTATTCCCTGCAGCCACATCAACAGAAGGACCCAGTTTGAGAACCCCGTCCTGGAGGCCAAGAGAcgactggagcagcagcagcagatgcAGAGCCAGGGACTGTCAGCTCTGCCCTTACCGACTATTTACAGAGAGAAGCCCCTGTTCACACGGGACCCCACACAGCTGAAGGGCTCCTTCTTGTCAACGGCTCTCCAGAAGAGCAACATGGGATTTGGCTTCACCATCATTGGAGGGGACGAGCCGGATGAGTTCCTGCAGGTCAAGAGTGTCATACCTGAGGGCCCAGCGGCACAGGATGGGAAGATGGACACAGGTGACGTCATAGTCTACATCAATGACATCTGTTGCCTGGGCACAACGCACGCCGACGTGGTCAAACTCTTTCAGTCCGTGCCCATCGGCCAGAGCGTCACCCTGGTCCTCTGCCGGGGATACCCCCTACCATTTGACCCTGAGGACTCTATTGGGGCGTCCACCAGTGCCTCCCTGACCCCCATGGGTCTGGAACACCGAACCCTGGTGATGAATGGGCGCAGTAGCTATGACCCTTACCTGGAGTACCTCTCCCTGAGCTCCCAGCTCCCTCCCCAGGCTCTAACACAGCCAGGGGCACCCCACCTTGATGGGTCCTCACTACCTCCCACCACCGTCCGGTCTGCACAGGCCATGACACCGCACGACGACAACATCTCCATGGCATCGTCGGGGGCGACAGGGATTGCCGGGGGCGTGATCCAGGGGGCAGAGCTGCTGACCGTAACCATTGTGAAGGGGGCAGAGGGGTTCGGATTCACCATCGCCGACAGCTCCACTGGGCAGTGTGTCAAACAGGTGTTGGAGCCGGGTGTACAGGGCGGAGTGGGTCTGAGTGAAGGAGACCTAATCCTGGAGGTGAACCAGCAGGGTGTTGTGGGGGCAGGACATGGACGTGTGGTGGAGCTGCTCAAAGAGTGTTCTGTCGGAGCCGAGGCCACGCTACTcatacagagaggaggaggggcagGTCACCTCTCTCCATGGAAGACCTCCAAACAGCTACCAGAGCAGTGGGACCCCCATGGTAGTCCCCAGACCAGTCTGTCAGCCCCAGTGCTTCCCACAGGCACACCCTTCCCTACCCAGCCACAGCACAGCACCTCGGTCCCTGACTCTGCAGAGGGCTTCGACCTCAACAAGCCCGACCCATACGACCTCTATGAGAAGTCTAGGGCCATCTATGAGAGTAGGCAGTACCAGGATGTGGAGGTGCACCTGTTGAGGGAGAAGACTGGGTTTGGCTTCCGCATCCTGGGGGGAGACGAGGCCGTGCAGGCTATTGTGATCGGGGCGATCATAGAGAACACTCCTGCAGAACGCGACGGACGACTTCGACCCGGGGACGAGCTCATCTCCGTGGATAAGATGGTGGTTGCTGGGAAACCACACAGATACGTGATCGACCTGATGCACACCGCCGCTCGCAATGGCCAGGTCAGCCTGGCGGTCCGGAGGAGAGTCCACTTCCCcaGTGAGGTGTTAGGGGTGAATGGCCGTAGCCCTGGTTCCGTGTCCACGCAGCACAGCTCCCCACACAGTGACGACGCCTCAGCTTCCTGTCCCGTCACCCCCGACAACGTCCCGCCGCCCTCCGTCACCTCCCCCCTGGAGGGTGCCGTCCCCCTGCAAACCAATGATGTCATCATCCACCGCAAGGAGAACGAAGGCTTTGGCTTCGTTATCATCAGCTCGTTGAACCGACCGGAGAACGCTGCCATCATCACTGTGCCCCATAAGATCGGTCGTATCATCGAGAGCAGCCCGGCAGACCGCTGCGGGAGCCTGAAGATTGGTGACCGGATCCTGGCTGTCAATGGGCAGTCCATCATCAGCATGCCCCACGCTGACATTGTCAAGCTCATCAAAGATGCCGGTCTCACTGTCACCCTTCACATCATACCAGAGGAAGATCCCAACTCAGGGCCCAGCTCAGAGAAGCAGAGCCCCATGGCCCAGAAACACAGCCCCCAGGCACAGCCCAGCCCTGTAGCCACCCAGCCCAGCCAAGGAGCCTCCCAGGCAGGCCCAGCACCACCAACAGCCCAGCCAGGCCAAGTACTAGCAGTAGACACCCAGTCGGCCCCAGGAGCAGCCGCCCAGCCCAACCCGCCAGGGGCCCAGCAGAGCCCGGTCGCCCAGCCGCCCAGTCACCCTCCCCCAATCTACCTCCACGATGGAAGGTCAGAGGTGAAAGCCAGGCAGGATGTGAAACCAGACATCTGCCAGCCTCCGTTCACCGACTACCGGCAGCCCCCCGTCGACTACCGGCACCCTCCAGTGACTGATTACCGGCAGCCGCCCACACTGGACTACCGGcaccctcctcccctcatcgACTACAGACAGCACTCGACATCACTCGCTGCACAGTTCCCTCTAGCACAGTTTCCCCCAGACTTCCGACCACAGGACTTTGACTACTTCACGGTAGAGCTGGAGAAGAGTGTGAAAGGTTTTGGCTTCAGTATCCGTGGGGGGCGGGAGTACAAgatagatctgtttgtgctgcggCTCGCCGAGGATGGGCCGGCCATCCGCAATGGCAGAATGAGGgtggggGATCAAATCATTGAGATAAATGGGGATAGTACCCGAGACATGACTCACGCCCGGGCCATCGAGCTGATCAAGGCAGGGGGGAGGTGGGTGAGACTGCTGCTGAAGAGAGGCACAGGACAGGTCCCTGAGTATGGCTTTTACTCTCCTTCCCTTAGGAATGGTACCTTCCAACCTCTCCATGTGCATGAAAAGTGACACGCTAAGTTCCCCCTATTTCTTCCTAATGGGCCACTCTAAAGTCACGTAGACAGTGCCCCCCCCTGGGAGGCCATTCCTCCAGCCCTCTCTGCCCTGCAGGAAGTGACCCTTGACCCCCAGCAGCCGTCCACCTCATCATTCTCATCCCATCCAGCCTTCACCCCAAACTCCCCCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169127 lncRNA downstream 6696 44753975 ~ 44754206 (-) True G147434
TU169036 lncRNA downstream 121625 44638960 ~ 44639277 (-) True G147354
TU169028 lncRNA downstream 137668 44615063 ~ 44623234 (-) True G147352
TU169034 lncRNA downstream 148555 44611210 ~ 44612347 (-) False G147352
TU169033 lncRNA downstream 149030 44611210 ~ 44611872 (-) False G147352
TU169751 lncRNA upstream 94106 45167246 ~ 45171077 (-) True G148011
TU169755 lncRNA upstream 100550 45173690 ~ 45173929 (-) True G148014
TU169756 lncRNA upstream 101376 45174516 ~ 45174727 (-) True G148015
TU169858 lncRNA upstream 183989 45257129 ~ 45257400 (-) True G148104
TU170078 lncRNA upstream 200296 45273436 ~ 45273702 (-) True G148282
XR_005036931.1 mRNA downstream 22924 44730092 ~ 44737978 (-) True LOC118940389
XR_005036925.1 mRNA downstream 154085 44577252 ~ 44606817 (-) False LOC110490449
LOC110501628 mRNA upstream 50573 45123713 ~ 45124844 (-) True LOC110501628
XM_036949646.1 mRNA upstream 61336 45134476 ~ 45168258 (-) False LOC110490531
XM_036949640.1 mRNA upstream 61336 45134476 ~ 45168260 (-) False LOC110490531
XM_036933947.1 mRNA upstream 98058 45171198 ~ 45171856 (-) True LOC118936755
XR_005036947.1 mRNA upstream 205254 45278394 ~ 45394968 (-) False si:ch211-272n13.3
TU168978 other downstream 182147 44571948 ~ 44578755 (-) False LOC110490449
TU168984 other downstream 182147 44571948 ~ 44578755 (-) False LOC110490449
TU168994 other downstream 182147 44571948 ~ 44578755 (-) False LOC110490449
TU168976 other downstream 182147 44572065 ~ 44578755 (-) False LOC110490449
TU168885 other downstream 324785 44434790 ~ 44436117 (-) True LOC110490352
TU169728 other upstream 61428 45134568 ~ 45168099 (-) True LOC110490531
TU172175 other upstream 1771040 46844180 ~ 46921593 (-) False tmem86a
TU172204 other upstream 1773012 46846152 ~ 46849616 (-) True G150290
TU172551 other upstream 1891594 46964734 ~ 46993665 (-) True G150618
TU172611 other upstream 2121753 47194893 ~ 47205433 (-) False G150675

Expression Profile