RNA id: XM_036949646.1


Basic Information

Item Value
RNA id XM_036949646.1
length 1343
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110490531
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45134476 ~ 45168260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACTACCGCATCCTTTCATTTTTACTTTCCATCCCTCCTCTACGAACCTGAATTGGAAGCATTAATCTCCCCTCCTCCAGACTTCACATCCGGGTCACCCACTAGTAGCCTATCTCCTGTgtcttgcctgtgtgtgtgtgacagcgtaGTTCTCCACCCAACTGTACTGCAGACCTCTACCCTAATACGCTGCATGCTAGACGGATACTATGCCTGGCATGTGTTGGTGATGGAGCTACCGGTGGCGCTCTGAGCTGGTGAGAGCCGAGACCTGCATGACACACACAGGCAGGGATGAGACATAGACTATCGGATAGGCACCCCGGATTGATAATACTAGCTCAATGATGTCCAATAGCCTGAAGAAGAAAAATCACTGGACCAACAAAGTCCACGAAGCGGTTGTCATCAGGAGCAAAGAAGGGGAATTTGGCTTCGAGCTGAAGGGGGGCGCGGAGATTGGGCAGTTCCCCTACTTCGGCGAGGTGAAACAAGGCAAAGCGGCTGTCCAGAGCGGAAAGCTGGCTCAGAGTGAGTTGCTGCTGGAGGTCAACAACACAGCGGTGGCTGGGCTCACCACCCGAGATGTTCTGGCCATCATCAAACACTGCAAAGACCCGGTCCGCTTCAAGTGTGTCAAACAAGcataaACTTGATCTCTGCCACCGGTGATCTAGGGTGAACAAGCAACACTTCAGCTTTAATtgtctggagcctggtgttgttgtgGCCAAGGAGCTTTCACTCAGATGGAACCAGGTTTCCGCTGCTGTGCAATGTTGACGCCCTTCCTCCCAGAGATATGAAGGCATCCCCCGGACTGGACACAACCAGGCAAACATATACGTTTGCAATGAAAGGCCATGGACATTTCTGTCCTGACCTTTGGAGCAGGACATGTAATATGCCCTCAGACTAGATTCCTTTGTCCATAACATAACCTGAACCAAAGTTACTCAAAGGATCTTGTGATATAAGCCTAGGTTTAGATATTGTTTTTACCTAAgcctttgtgtgtttgtgtgtttttaagTTTTTCataattgtaggctactactaATAAATCATTTTATTgttgaaacttttttttttttttaagcactacctcactgctttagcacatggCCACATTCACAATTGTTCCTATGTGAATTATTTAAGAGATGGTGTGTCTTGGGCTTTAGAGCAGGCCTGGGTAATTATTTTCCATGGAGAgccacattagaatatatttttgccatcgcgggccagaatcatattacaggattataaatcatgtgtatgactgtgttgacagatatctactgtaacatGCACAGtaacatgcacagaaataaacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169532 lncRNA downstream 257680 44876470 ~ 44876796 (-) True G147812
TU169528 lncRNA downstream 260229 44874031 ~ 44874247 (-) True G147808
TU169524 lncRNA downstream 263074 44870880 ~ 44871402 (-) True G147804
TU169523 lncRNA downstream 263802 44870148 ~ 44870674 (-) True G147803
TU169522 lncRNA downstream 265763 44868473 ~ 44868713 (-) True G147802
TU169755 lncRNA upstream 5432 45173690 ~ 45173929 (-) True G148014
TU169756 lncRNA upstream 6258 45174516 ~ 45174727 (-) True G148015
TU169858 lncRNA upstream 88871 45257129 ~ 45257400 (-) True G148104
TU170078 lncRNA upstream 105178 45273436 ~ 45273702 (-) True G148282
TU170083 lncRNA upstream 115772 45284030 ~ 45284241 (-) True G148287
LOC110501628 mRNA downstream 9632 45123713 ~ 45124844 (-) True LOC110501628
XM_036949632.1 mRNA downstream 61336 44760842 ~ 45073140 (-) False LOC110501618
XM_036949625.1 mRNA downstream 61336 44760896 ~ 45073140 (-) False LOC110501618
XM_036949622.1 mRNA downstream 61336 44760902 ~ 45073140 (-) True LOC110501618
XM_036949615.1 mRNA downstream 61337 44760842 ~ 45073139 (-) False LOC110501618
XM_036933947.1 mRNA upstream 2940 45171198 ~ 45171856 (-) True LOC118936755
XR_005036947.1 mRNA upstream 110136 45278394 ~ 45394968 (-) False si:ch211-272n13.3
XR_005036948.1 mRNA upstream 110136 45278394 ~ 45394968 (-) False si:ch211-272n13.3
XR_005036949.1 mRNA upstream 110136 45278394 ~ 45394968 (-) False si:ch211-272n13.3
XR_005036950.1 mRNA upstream 110136 45278394 ~ 45394968 (-) False si:ch211-272n13.3
TU169520 other downstream 270917 44863085 ~ 44863559 (-) True G147800
TU168978 other downstream 555721 44571948 ~ 44578755 (-) False LOC110490449
TU172175 other upstream 1675922 46844180 ~ 46921593 (-) False tmem86a
TU172204 other upstream 1677894 46846152 ~ 46849616 (-) True G150290
TU172551 other upstream 1796476 46964734 ~ 46993665 (-) True G150618
TU172611 other upstream 2026635 47194893 ~ 47205433 (-) False G150675
TU173467 other upstream 2682527 47850785 ~ 47851348 (-) True G151474

Expression Profile