RNA id: XM_036960073.1


Basic Information

Item Value
RNA id XM_036960073.1
length 3337
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110502500
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96051302 ~ 96092405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCCTAGATTTAATGAACGGCTAAAATAATGGCATGAATTAAGTGTGCTTTTCTATAGTTCTACTCAGACGCGCATCACGTGTTTCGGTTCAATTCTCAGCGGTTTCCATGAACTGAACTATAGGCTCCAAGTGCTCAGATTGCTCCAATTCTCCGGGTATGTTGGTCGCTTGTCAAAGCCGGACTGAAATCCACAACCAAAAAAATGAACATTCTGAGAAATTGATTGAGTTGATTATTGAAGAAAGCGATATTGCTATTGGACAATAAAGAATATGGAAAACTGAAAACTGGAAGCGGGGGTTCGTTCGGGCAAGGGTTCTGCTACGAAGAAGTTTCAGAGCGGATATAACGTCGACACGTCGAAGCTCTGCAGCCTCTGAGCTCCTTCAGTTCAGAAAAAAATACTTGGGTGTGAGTTGAACCAATGACGAAAGATTACAACAGAGAAATTCCTTCACCTGAAGAAACCATTATCTTCCTTAGAAAGATGGAGGTTCCATCTAAGGCGAGGTGGACCCCAGACGACGTCTCCTCTACCCCATCATCTTCAGGGATGCAGAGGTCCAGTTGCTCCAGTCTGAAGatGTTCCTGGCTGCCCTGTCCTTTGCCTACTTCTCTAAGGCCTTGTCTGGGAGTTACATGAAAAGTACGATAACCCAGCTGGAGAGGAGATTTGATATCCCAAGTTATTTGATAGGTGTTATCGACGGGAGCTTTGAAATAGGTAACCTATTGGTGATCGCCTTTGTGAGTTATTTTGGTGCCAAGCTTCACCGACCTAAGATCATAGCGATCGGATGTGTCCTGATGTCGTTTGGGACGTTCCTCATCGCCATGCCTCATTTTATTTTAGGACGCTATAAGTTCCAATCGTCAGTTAGAGGGTCCATGAATTCAACCACTACCTTCGGTCCATGTCCAGCAAGCTCAGCTGAGTCCACACAGGCAGGTGACAAGGCCTCTATACTGCCGTCTGTAGGCTGTGAGCAAGAGTCCAGTGTGTCTATGTGGATCTATGTGTTCCTGGGTAATGTGTTAAGAGGGATAGGAGAGACTCCTGTACATCCGCTGGGAATCTCCTATATAGACGACTACGCCAGGTCTGAGAATGCAGCCCTTTACATTAGCTGTGTCCAGACCATATCAATCATAGGTCCCGTCTTTGGCTACTTACTAGGATCCTTGTGTGCCAAGATATACGTTGACATAGGATACGTGAACATGGAGACTATCACCATCACCCCAGGCGATGCCCGCTGGGTGGGGGCGTGGTGGCTGGGGTACCTCATAGCCGGGGCTATCACCCTCATGTCTGCTGTACCCTTCTGGTTCCTGCCCAAGTCGTTGCCTATTCCCGTGGATAAGCAACTTAATGCCAACTTCACCCCAGAACAGACCCGGTTCATCAAGGACTCTCCCTCAGCCATGGAACATAagtttagaccagaggaaccagccAACTTCCATCAAATGGCTAAAGAATTTGTTCCAACATTGAAGAGCCTACTGGGAAGTCCAGTCTATATAACCTACCTCTGCGTGACTATTATTCAATTCAACTCTCTCATCGGCATGGTAACCTACAAGCCCAAATACATTGAGCAACATTACGGAAAGTCAGCATCAAAAGCCAACTTCCTAATGGGCATGGTCAACATCCCTGCAGTGGCTCTGGGGATGTTCTCAGGTGGTGTGCTCATGAAGAAGTTCAAGCTGGGCGTCATGGGAGCTGCTAAGTTCGCCTTCGGGACCTCCCTGCTGGGGTACTTCCTGTCCCTCTTCTTCTTCGCCATGGGCTGTGACAACGCCAAGGTGGCTGGGATAACCATGTCATACACAGGGGTGGAGGGTTTGTCGTACCAGCAGCCATCTCTGTTCTCTGAGTGTAACTCCGGTTGCCTGTGCTCCGGGAGTGACTGGGACCCTGTCTGTGGAGAGAACGGGATCACTTACGTGTCCCCCTGTTTGGCTGGCTGTACATCCTCTACCGGAGCAGGCAAAAACACGgtGTTTCACCAGTGCAGGTGTGTGGCGGTGACAGGGGCAGGTTCTCAGCCCAGTAACCTGACTGCCTCCCTGGGTCACtgtccaatcagagacagctgtgaCACAATGTTCCCCTACTTCCTCTTCTTGTCTGTCATCACTTCCTTCATCATCTCTCTGGGGGGAACGCCAGGCTTCATGCTTCTCATCAGGTGCATTAAGCCTGAGTTTAAATCCCTTGCTCTTGGAGTCCACACGTTGGCCACCCGGACCCTGGcTGGCATCCCTGCACCTATCTACTTCGGAGCCGTCATAGACACTACCTGTTTAAAGTGGGGAAACACAAAATGCGGAAGAAGAGGAGCGTGTAGAATCTACAACACAACAGCCTACAGggTAGTATACCTAGGTCTGACTATGGGCCTAAGGACTGTCTCTTTCTTCCTGTGTATACTGGGCTTCGCTCTACTCAGGAGGCACGTCAAGCAGGAAGAGAAAATAGCATTGACCAATGGGAATGTAGAGATGGAGTTCGAGTCTCTCAGGAAAGAGGAAAGCAACAACTCTATCCACTCTGACCAGTTTGTAAGAGCGCTGGACTGTAACCCTGACAGGGAGACACGGCTTTGATGGTCCTCAATATCTCAACATAGCTCGACTCCAAGACAGAATGAAACAGGTGTCGGGGGGAGCAACTTTTGCCCTCATAAAGCTAGTTGTGATCTCCCCCAAGTGGGTTAACCCTGTCGGAGTAGACTGTGTTTAGCAAGTTAGCCAACAGTCTAAGAAGCCCATGTTTTCCTTGTCACCGTTCACTACAACGCTAATCATTTTCGACAGTACCAGTGTTAATTATTTTTGGGGTGAATATTCAACAAATATTTTTTGTGAAAGGTGTCAGTACCCTGCGCTGGTACTCCATACCATTGTGTACCTGCTCCACTGACCCAATACATGCCCTGACATCTCCTTTTACGGTATTTTTCCACCCTGAATACAAGTGATTTAGCGAGGAGAGAAGAGCATAAAGTATATTTGTACTGTACTCCTGTAGATGATGTGAAAATaaattgatgtttttttgtttatacaGTACCTAGTGAAAGTATACACACCCCTTGCAGAGTattcacattttgctacattacaCTTTTTATCTAAAAAGGGATTACATTAGATATTTTTCCTCCAGATCTATACAACTCCATATTTCCAAAAAAGTGAACAAAAgttatttcaaagattttactgagttaaagttcatatgaggaaattgTAAtgaattagaccctaatctatggatttcacatgactgggaatacagaactgaatctgttgatcacaga

Function

GO: NA

KEGG:

id description
K08747 SLCO1C; solute carrier organic anion transporter family, member 1C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235826 lncRNA downstream 1463 96049416 ~ 96049839 (-) True G208308
TU235849 lncRNA downstream 23962 96027046 ~ 96027340 (-) True G208320
TU235848 lncRNA downstream 25282 96024926 ~ 96026020 (-) True G208319
TU235845 lncRNA downstream 37843 96011026 ~ 96013459 (-) True G208316
TU235844 lncRNA downstream 38321 96011026 ~ 96012981 (-) False G208316
TU235895 lncRNA upstream 17591 96109996 ~ 96117440 (-) True G208361
TU235902 lncRNA upstream 30637 96123042 ~ 96124588 (-) True G208368
TU236017 lncRNA upstream 33547 96125952 ~ 96126837 (-) True G208469
TU236015 lncRNA upstream 34764 96127169 ~ 96128073 (-) False G208468
TU236016 lncRNA upstream 34786 96127191 ~ 96129234 (-) True G208468
XR_002475062.2 mRNA downstream 167623 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 330187 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 386799 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 419330 95628449 ~ 95631972 (-) False parietopsin
LOC118944198 mRNA downstream 780030 95271093 ~ 95271272 (-) True LOC118944198
XM_036960080.1 mRNA upstream 37906 96130311 ~ 96370206 (-) False LOC110502509
LOC110500576 mRNA upstream 541436 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 554725 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 554725 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 554725 96647130 ~ 96897073 (-) False LOC110500541
TU235579 other downstream 218940 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 364438 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 364438 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 441516 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 527075 95523968 ~ 95524227 (-) True G207959
TU236021 other upstream 41672 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 329461 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1324416 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1408767 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1526454 97618859 ~ 97619212 (-) True G209841

Expression Profile