RNA id: LOC118944190



Basic Information


Item Value
RNA id LOC118944190
length 179
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC118944190
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97621775 ~ 97675000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaacttttccaaaagaaaagaaaaatctgttcttatcagtttaatatctgatacgtcccctaTCTGGGGACcatatattaaattgatttttgGAATAGGGAGATGGAataggggcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggAACGGTGCACCCCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237673 lncRNA downstream 3982 97617666 ~ 97618024 (-) True G209858
TU237711 lncRNA downstream 9903 97609516 ~ 97612103 (-) True G209875
TU237730 lncRNA downstream 17629 97604157 ~ 97604377 (-) True G209883
TU237728 lncRNA downstream 22409 97599359 ~ 97599597 (-) True G209881
TU237690 lncRNA downstream 22873 97595728 ~ 97599133 (-) False G209874
TU237679 lncRNA upstream 4139 97626323 ~ 97690421 (-) True LOC118943865
TU237733 lncRNA upstream 10617 97632801 ~ 97669516 (-) False G209885
TU237668 lncRNA upstream 13952 97636136 ~ 97691714 (-) True LOC118943869
TU237734 lncRNA upstream 15467 97637651 ~ 97673250 (-) True G209886
TU237665 lncRNA upstream 17703 97639887 ~ 97676568 (-) True G209850
XM_036934797.1 mRNA downstream 125508 97494344 ~ 97496498 (-) True LOC118937309
XM_036960153.1 mRNA downstream 234053 97089207 ~ 97387953 (-) False LOC110502515
XM_036960120.1 mRNA downstream 544106 97019591 ~ 97077900 (-) False pik3c2g
XM_036960127.1 mRNA downstream 544106 97028186 ~ 97077900 (-) True pik3c2g
XM_036960115.1 mRNA downstream 724933 96647130 ~ 96897073 (-) False LOC110500541
LOC118944213 mRNA upstream 3597 97625781 ~ 97625897 (-) True LOC118944213
XR_005039512.1 mRNA upstream 25677 97647861 ~ 97648048 (-) True LOC118944196
XM_036960269.1 mRNA upstream 30022 97652206 ~ 97689832 (-) False LOC118943865
XM_036960208.1 mRNA upstream 32967 97655151 ~ 97660464 (-) True LOC118943862
LOC118944194 mRNA upstream 60754 97682938 ~ 97683118 (-) True LOC118944194
TU237655 other downstream 2794 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 119612 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 204818 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1199782 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1487534 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 522136 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1296264 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1320290 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1403548 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1501049 99123233 ~ 99123658 (-) True G211127

Expression Profile